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12 protocols using p drp1 ser616

1

Immunofluorescence Staining of Neuronal Markers

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Immunofluorescence staining was carried out in animals as reported previously [19 (link)]. Briefly, free-floating sections (thickness = 30 μm) of the hippocampus were incubated with a rabbit polyclonal antiserum against p-Drp1 (Ser616) (Cell Signaling) and a mouse monoclonal antiserum, neuron-specific nuclear protein (NeuN, Chemicon). Two secondary antibodies were used that included a goat anti-rabbit IgG-conjugated with Alexa Fluor 488 for p-Drp1(Ser616) and a goat anti-mouse IgG conjugated with Alexa Fluor 568 for NeuN (Molecular Probes, Eugene, OR, USA). The merged images indicated the presence of p-Drp1(Ser616) immunoreactivity in the cytosol and NeuN in the nucleus of neurons. For double immunofluorescence staining of p-Drp1(Ser616) and COXIV, the sections of the hippocampus were first incubated with a rabbit polyclonal antiserum against p-Drp1(Ser616) (Cell Signaling). The sections were subsequently incubated with a goat anti-rabbit IgG conjugated with Alexa Fluor 488 for p-Drp1(Ser616). After fixed with 4 % paraformaldehyde for 5 min, the same sections were incubated with a polyclonal rabbit antiserum against COXIV (Cell Signaling) and then with DyLight 405-conjugated AffiniPure goat anti-rabbit IgG (Jackson ImmunoResearch, West Grove, PA, USA) for labeling COX IV.
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2

Immunoblotting for Pathway Activation

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Cells were washed with PBS and lysed in 1x RIPA buffer with protease and phosphatase inhibitors, with the addition of 1 U/ml Benzonase to degrade genomic DNA. Proteins were separated by SDS-PAGE and transferred to nitrocellulose membranes. Membranes were blocked for 1 hr at RT in LiCOR Odyssey blocking buffer. Blots were (Licor) and incubated overnight at RT with the following antibodies: IRF3 (Cell Signaling, 1:1000); pIRF3 Ser396 (Cell Signaling, 1:1000); STAT1 (Cell Signaling, 1:1000); pSTAT1 Tyr701 (Cell Signaling, 1:1000); Beta Actin (Abcam, 1:2000), β-Tubulin (Abcam, 1:5000); DRP1 (Cell Signaling, 1:1000); pDRP1 Ser616 (Cell Signaling, 1:1000), TFAM (Millipore, 1:1000), VDAC (Protein Tech, 1:1000). Membranes were incubated with appropriate secondary antibodies for 2 hr at RT prior to imaging on a LiCOR Odyssey Fc Dual-Mode Imaging System.
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3

Mitochondrial Dynamics Regulation Analysis

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IP/WB analysis was carried out as described previously.6 The antibodies against the following molecules were used for the analyses: Sirt6 (1:500; Abcam; #ab62739), Drp1 (1:1000; Abcam; #ab56788), mitofusin2 (Mfn2) (1:1000; Abcam; ab56889), mitochondrial fission protein 1 (Fis1) (1:1000; Genetex; GTX111010), p‐Drp1‐Ser616 (1:1000; Cell Signalling Technology; #3455), optic atrophy 1 (OPA1) (1:1000; ImmunoWay; YN2976), and p‐Drp1‐Ser637 (1:1000, Cell Signalling Technology; #4867).
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4

Mitochondrial Dynamics in Parkinson's Disease

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Sinapic acid (SA, Cat# D7927), MPTP (Cat# M0896) and MPP+ (Cat# D048) were obtained from Sigma–Aldrich (St. Louis, MO, USA). SR8278 (SR, Cat# 4463) and GSK4112 (GSK, Cat# 3663) were purchased from Tocris Bioscience (Bristol, UK). DMEM and FBS were obtained from HyClone (Logan, UT, USA). Trypsin-EDTA and a mixture of penicillin and streptomycin were purchased from Gibco-BRL (Grand Island, NY, USA). Rabbit anti-TH (Cat# 2792S), REV-ERB α (Cat# 13418S), p-Drp1 Ser616 (Cat# 3455S), p-Drp1 Ser637 (Cat# 4867S), and GAPDH (Cat# 2118S) were purchased from Cell Signaling Technology Inc (Boston, MA, USA). Anti-rabbit (Cat# 7074S) and mouse (Cat# 7076S) horseradish peroxidase (HRP)-linked IgG antibodies were also obtained from Cell Signaling Technology Inc. The mouse anti-Drp1 antibody (Cat# sc-271583) was purchased from Santa Cruz Biotechnology Inc (Santa Cruz, CA, USA). The rabbit anti-OPA1 antibody (Cat# ab157457) and MFN2 (Cat# ab56889) were purchased from Abcam (Cambridge, UK).
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5

Immunohistochemistry Protocol for Cellular Analysis

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Immunohistochemistry was performed following a standard protocol. Paraffin-embedded sections were dewaxed in xylene and rehydrated in gradient ethanol. Antigen retrieval was performed using 0.01 M sodium citrate in a high-pressure cooker. After cooling down, sections were incubated in 3% H2O2 for 10 min and blocked with goat serum for 1 h, followed by primary antibody incubation at 4 °C overnight. On the second day, the sections were incubated with secondary antibodies for 15 min at room temperature and developed with diaminobenzidine. Ki67 (Cell Signaling, 9449), CHD6 (Santa Cruz, sc-393445), TMEM65 (Sigma, HPA025020), COX IV (Cell Signaling, 4850), PPOX (Santa Cruz, sc-271768), p-Drp1(Ser616) (Cell Signaling, 4494S), OPA1 (Santa Cruz, sc-393296) and cleaved Caspase-3 (Asp175) (Cell Signaling, 9664) antibodies were used.
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6

Mitochondrial Dynamics Regulation in ERS

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This study used monoclonal antibodies (mAb) against Mitofusin1 (Mfn1, #14,739), Mitofusin2 (Mfn2, #11,925), Optic atrophy 1 (OPA1, #67,589), Mitochondrial fission factor (MFF, #84,580), Dynamin-related protein 1 (Drp1, #8570), p-Drp1 Ser616 (#4494, Cell Signaling Technology, Beverly, MA, USA); Glucose-regulated protein 78 (GRP78, ab21685) and β-actin (ab8226, Abcam. Cambridge, MA, USA); polyclonal antibodies (pAb) against GRP75 (A0558), C/EBP homologous protein (CHOP, A0221, Abclonal, Wuhan, China). Other specific reagents included MitoTracker® Deep Red FM (M22426) and ER-Tracker™ Blue (E12353), bicinchoninic acid (BCA) protein detection kit (#23,227, Thermo Fisher Scientific, Waltham, MA, USA), polyvinylidene difluoride (PVDF) membrane (GE Health, New York, USA), DCFH-DA (D6883) and 4-phenylbutyrate (4-PBA, an ERS inhibitor, SML0309, Sigma, St. Louis, USA); DAPI (G1012, Servicebio, Wuhan, China), JC-1 mitochondrial membrane potential detection (MMP) kit (C2006) and ATP detection kit (S2006, Beyotime Biotechnology, Beijing, China), MKT077 (a GRP75 inhibitor, HY15096, MCE, NJ, USA), and GRP75 siRNA (AuGCT Biotechnology, Wuhan, China).
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7

Immunohistochemical Analysis of Nasal Tissue

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Sections of nasal tissue were rinsed and blocked with 5% bovine serum albumin and 0.3% Triton X‐100 in PBS. Subsequently, sections were incubated with antibodies against p‐JAk2, p‐STAT6, TOM20 (all 1:200, Abcam), and p‐Drp1 (Ser616) (1:400, Cell Signaling Technology). Following rinses with PBS and incubation with Alexa 594‐conjugated secondary antibodies, slides were viewed under a fluorescence microscope (Olympus) or confocal fluorescence microscopy (Carl Zeiss; Leica).
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8

Mitochondrial Dynamics in Cancer Cell Apoptosis

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Doxorubicin (Beyotime Institute of Biotechnology, Shanghai, China), luteolin (≥98%, Santa Cruz Biotechnology, sc-203119), mdivi-1 (≥98%, Sigma Aldrich, M0199). Bax (1:1,000, Cell Signaling Technology, #5023S), Bcl-2 (1:1,000, Cell Signaling Technology, #15071S), Bnip3 (1:1,000, Cell Signaling Technology, #44060), cleaved caspase-9 (1:1,000, Cell Signaling Technology, #9509S), Drp1 (1:1,000, Cell Signaling Technology, #8570), p-Drp1 (Ser616) (1:1,000, Cell Signaling Technology, #3455S), LAMP1 (1:500, Abcam, ab208943), LC3B (1:1,000, Abcam, ab48394), mTOR (1:1,000, Cell Signaling Technology, #2983S), p-mTOR (Ser2448) (1:1,000, Cell Signaling Technology, #5536S), P62 (1:1,000, Cell Signaling Technology, #5114S), parkin (1:1,000, Cell Signaling Technology, #4211), Pink1 (1:1,000, Abcam, ab216144), TFEB (1:500, Cell Signaling Technology, #32361S), vinculin (1:1,000, Abcam, ab129002);anti-mouse Alexa Fluor (1:1000, Cell Signaling Technology, #4408), anti-rabbit Alexa Fluor (1:1,000, Cell Signaling Technology, #8890);β-actin (1:5,000, KangChen Bio-tech, Shanghai, China).
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9

Mitochondrial Dynamics Regulation in Cells

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All chemicals and reagents (unless otherwise stated) were of analytical grade and were purchased from Sigma-Aldrich® (Merck KGaA, Darmstadt, Germany). Antibodies against AMP-activated protein kinase (AMPK), sirtuin 3 (SIRT3), superoxide dismutase 2 (SOD2), B-cell lymphoma 2 (Bcl-2), pro-caspase3, cleaved-caspase3, phospho-dynamin-like protein 1 at Ser616 (p-Drp1Ser616), mitofusin 2 (Mfn2), phospho-IκBα (p-IκBα), phospho-NFκB p65 (p-NFκB p65), tumor necrosis factor-alpha (TNF-α), and β-actin were purchased from Cell Signaling Technology (Danvers, MA, USA). Peroxisome proliferator-activated receptor gamma coactivator 1 alpha (PGC-1α), phospho-AMPK at Thr172 (p-AMPKThr172), and interleukin-1beta (IL-1β) were obtained from Merck (Merck KGaA, Damstadt, Germany). Total OXPHOS antibody cocktail, acetylated SOD2 (Ac-SOD2), and Bcl-2-associated X protein (Bax) were purchased from Abcam (Cambridge, MA, USA).
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10

Mitochondrial Protein Analysis by Western Blot

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Western blotting was performed as we described previously [17 (link),19 (link),30 (link)]. Briefly, cells were lysed and lung tissue was homogenized. Mitochondrial fraction was prepared using subcellular fractionation kit (G-Biosciences, St. Louis, MO, USA) per manufacturer's instructions. Protein samples were separated by SDS-PAGE electrophoresis (Thermo-Fisher) and transferred to nitrocellulose membranes. We used the following antibodies: DRP1, TOM20, mtTFA, MFN1, MFN2, POLγ, TDP1, DJ-1 (all from Santa Cruz Biotechnology), TOP1-cc (Millipore), p-DRP1 (Ser616) (Cell Signaling Technology, Danvers, MA, USA), GAPDH (Abcam, Cambridge, MA, USA) and β-actin (Sigma, St. Louis, MO, USA). We used horseradish peroxidase (HRP)-conjugated AffiniPure donkey anti-rabbit immunoglobulin (Ig) G or anti-mouse IgG purchased from Jackson ImmunoResearch (West Grove, PA, USA). The blots were developed using an enhanced chemiluminesence kit for Western blotting (Millipore) according to the manufacturer's instructions. Images were quantitated using NIH Image J software.
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