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3 protocols using rabbit anti ph2ax

1

Immunohistochemical Analysis of Tumor Samples

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Formalin-fixed, paraffin-embedded tumor samples were sectioned at a thickness of 3 μm, dewaxed, hydrated and stained with hematoxylin and eosin (H&E) or processed for immunohistochemistry with rabbit anti-human c-Myc (Abcam), rabbit anti-pH2AX (Cell Signaling Technology, MA, USA) or rabbit anti-nitrotyrosine (Millipore) antibodies.
Positive signal was revealed by 3,3’-diaminibenzidine (Roche) stainings. Sections were finally counterstained with Carazzi’s hematoxylin before analysis by light microscopy. Images were acquired with the automatic high-resolution scanner Aperio System (Leica Biosystems, Wetzlar, Germany, EU) and image analysis was carried out using the open-source ImageJ software.
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2

Comprehensive Immunohistochemistry Staining Protocol

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We performed immunohistochemistry (IHC) staining as previously described.15 (link) Primary antibodies used were rabbit anti-Ki67 (1:500) (Cell Signaling Technology, 12202), rabbit anti-NFκB-p105/p50 [p Ser337] (1:300) (Novus Biologicals, NB100–82074), rabbit anti-pSmad3 (1:400, Abcam, ab52903), rabbit anti-pH2AX (1:100) (Cell Signaling Technology, 9718), rabbit anti-myeloperoxidase (Ready-to-Use, Dako, GA51161–2), rabbit anti-hemagglutinin (HA) (1:700) (Cell Signaling Technology, 3724), rabbit anti-IL-1β (1:500) (Novus Biologicals, NB600–633), rabbit anti-TNF-α (1:200) (Novus Biologicals, NBP1–19532), mouse anti-CCL2 (1:50) (Novus Biologicals, MAB28171), and goat anti-IL-6 (1:40) (R&D, AF1609) antibodies. Nuclear pSmad3-, NFκB p50-, or pH2AX-positive cells were quantified as the percent of positive cells per total epithelial cell count (excluding sloughed epithelial cells induced by irradiation). Nuclear Ki67 was quantified as positive cells per length of basement membrane. For pH2AX staining, cells with more than 3 nuclear foci were defined as pH2AX-positive cells. Myeloperoxidase-positive cells were quantified per square millimeter epithelial and stroma area above the muscle layer, and sequential 10 × images along the basement membrane were quantified and averaged per sample using Olympus cellSens Dimension software.
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3

Immunofluorescence Microscopy of DNA Damage

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1 × 105 cells were seeded on glass cover slips prior to treatment in a 24-well plate. After treatment, cells were fixed with 4% paraformaldehyde for 20 min. They were subsequently washed with PBS and blocked with 5% FBS/PBS with 0.3% Triton-X. The cells were incubated overnight at 4 °C with primary antibody (Mouse Anti-PARP1, 1:1000 (Sigma); Rabbit Anti-pH2AX, 1:500 (Cell signalling)) dissolved in blocking solution. After washing with PBS, the cells were incubated for 1 h with secondary antibodies (Goat Anti-Mouse DyLight 488, 1:2000 and Goat Anti-Rabbit Alexa Fluor 568, 1:1000) at room temperature. After the PBS wash steps, the cells were mounted with Roti Mount® Vectashield containing DAPI and analysed using fluorescence microscopy (Zen Lite, Carl Zeiss, Jena, Germany). Quantification was performed using CellProfiler 3.0 software.
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