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5 protocols using trizol plus rna puri cation kit

1

Quantitative Analysis of miR-766-5p

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Total RNA was harvested (TRIzol™ Plus RNA Puri cation Kit, Invitrogen) and reversely transcribed into cDNA (M-MLV Reverse Transcriptase, Promega). TaqMan MicroRNA Assay kit (Applied Biosystems; Thermo Fisher Scienti c, Inc.) were employed to quantify miR-766-5p, the relative expression of miR-766-5p was normalized to U6, and others were normalized to GAPDH based on 2-△△ Ct method [19] . The primers were listed in Table 1
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2

RNA Extraction and qRT-PCR Analysis

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Total RNA was extracted by TRIzol™ Plus RNA Puri cation Kit (Invitrogen, USA) according to the manufacturer's instructions. cDNA was prepared from RNA using the ReverTra Ace RT-PCR Kit (TOYOBO Biotech, Japan). All the RT-PCR reactions were performed with SYBR Green Master (Roche Molecular Systems, Switzerland). β-actin was used as an internal control.
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3

RNA Isolation and qPCR Analysis from Jejunum

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A TRIzol Plus RNA puri cation kit (Invitrogen Canada Inc.) was used to isolate RNA from 80 mg of the ground jejunum. The quantity and quality of the isolated RNA were evaluated using a Nanodrop 2000 spectrophotometer (ThermoFisher Scienti c). The integrity of the total RNA was con rmed by agarose gel electrophoresis. A total of 2 μg of total RNA was used to synthesize cDNA using a high-capacity cDNA synthesis kit (Applied Biosystems) following the supplier's protocol. Quantitative real-time PCR was performed in duplicate reactions, using a CFX Connect Real-Time PCR Detection System (Bio-Rad Laboratories), as described by Waititu et al. (Waititu et al.) . For qPCR ampli cation, negative controls were prepared by replacing the cDNA with nuclease-free water. A melt curve analysis was performed with a temperature gradient of 0.1°C/s from 70°C to 95°C to con rm that only speci c products were ampli ed. Pairs of primers for each gene were designed and checked for target identity using the National Center for Biotechnology Information database (Supplemental Table 1). Each set of primers used for qPCR ampli cation con rmed that their e ciencies were between 90% and 110%.
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4

Quantitative RT-PCR for Gene Expression Analysis

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Total RNAs in cells and tissues were extracted by TRIzol™ Plus RNA puri cation kit (Invitrogen) and rststrand cDNA was synthesized by the ImProm-reverse transcription system (Promega). Real-time PCR assays were conducted by the SYBR Green Mastermix (Applied Biosystems) and all procedures were performed according to the manufacturer's instructions. Speci c primers used for genes were as follows: NFAT2 forward, 5'-GCTATGCATCCTCCAACGTC-3'; and reverse, 5'-AGTTFFACTCGTAGGAGGAG-3'; EGR2 forward, 5'-TCAGCATCTCCCAACCTAT-3'; and reverse, 5'-ACAACAAACACTACCACCCT-3'; FASL forward, 5'-GTTCTGGTTGCCTTGGTAG-3'; and reverse, 5'-CATCTGGCTGGTAGACTCT-3'; COX-2 forward, 5'-GAAAGCCCTCTACCATGACATC-3'; and reverse, 5'-CACCCTTTCACATTATTGCAGA-3'; c-myc forward, 5'-GCCACGTCTCCACACATCAG-3'; and reverse, 5'-TCTTGGCAGCAGGATAGTCCTT-3'; β-actin forward, 5'-CTGGGACGACATGGAGAAAA-3'; and reverse, 5'-AAGGAAGGCTGGAAGAGTGC-3'. All data were analyzed by the ABI7300 system SDS software (Applied Biosystems) and the mRNA relative expression was calculated by the 2 -∆∆Ct method. The β-actin expression was regarded as control.
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5

Cytotoxic and Apoptotic Effect Analysis

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Fetal bovine serum (FBS), phosphate buffered saline (PBS), Penicillin-Streptomycin, trypsin-EDTA and Dulbecco's modi ed Eagle medium (DMEM) were purchased from GIBCO (Grand Island, NY, USA). The human TNF-α was purchased from Pepro Tech (Rocky Hill, NJ, USA). Griess reagent, dimethyl sulfoxide (DMSO), Cell Counting Kit-8 (CCK-8 kit), BCA Protein Assay Kit, and Annexin V-FITC/PI apoptosis kits were purchased from the BOSTER Biol.Tech. Co. (Wuhan, China). Cell Cycle Staining kits were purchased from Beyotime Biotechnology Company (Haimen, China). TRIzol™ Plus RNA Puri cation Kit (Invitrogen life technology, Carlsbad, CA, USA), ReverTra Ace® qPCR RT Master Mix (Beans Biol Tech. Co., Tokyo, Japan) and SYBR Green RT-PCR reaction kit (QPK-201, Toyobo, Tokyo, Japan) were used in RT-PCR experiment.
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