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Standard pulse sequence hsqcetfpf3gpsi

Manufactured by Bruker

The Standard pulse sequence (hsqcetfpf3gpsi) is a nuclear magnetic resonance (NMR) spectroscopy technique that enables the detection and analysis of heteronuclear single quantum coherence (HSQC) in samples. The sequence is designed to provide efficient and reliable data acquisition for various applications in chemistry, biochemistry, and materials science.

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3 protocols using standard pulse sequence hsqcetfpf3gpsi

1

NMR Titration of TDP-43 LCD with HSPB1

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All NMR titration experiments were performed at 298 K on a Bruker 900 MHz spectrometer equipped with a cryogenic probe in an NMR buffer of 50 mM HEPES (pH 7.0), 50 mM NaCl, and 10% D2O. Each NMR sample was made with a volume of 500 μL, containing 10 μM 15N labeled TDP-43 LCD. We performed the titration experiment by addition of 5 μM or 10 μM HSPB1 and its variant respectively. Bruker standard pulse sequence (hsqcetfpf3gpsi) was used to collect the 2D 1H-15N HSQC spectrum with 32 scans, and 2048 × 160 complex points were used for 1H (14 ppm) and 15N (21 ppm) dimension, respectively. Backbone assignment of TDP-43 LCD was accomplished according to the previous publication12 . All NMR data were processed by NMRPipe123 and analyzed by Sparky124 .
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2

NMR Titration of TDP-43 LCD with HSPB1

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All NMR titration experiments were performed at 298 K on a Bruker 900 MHz spectrometer equipped with a cryogenic probe in an NMR buffer of 50 mM HEPES (pH 7.0), 50 mM NaCl, and 10% D2O. Each NMR sample was made with a volume of 500 μL, containing 10 μM 15 N labeled TDP-43 LCD. We performed the titration experiment by addition of 5 μM or 10 μM HSPB1 and it's variant respectively. Bruker standard pulse sequence (hsqcetfpf3gpsi) was used to collect the 2D 1 H- 15 N HSQC spectrum with 32 scans, and 2048 × 160 complex points were used for 1 H (14 ppm) and 15 N (21 ppm) dimension, respectively. Backbone assignment of TDP-43 LCD was accomplished according to the previous publication 20 . All NMR data were processed by NMRPipe 128 and analyzed by Sparky 129 .
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3

NMR Characterization of TDP-43 LCD Binding

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Backbone assignment of TDP-43 LCD was accomplished according to the previous publication (Conicella et al., 2016) . All NMR titration experiments were performed at 298 K on a Bruker 900 MHz spectrometer equipped with cryogeni probe in an NMR buffer of 20 mM MES (pH 6.0), 150 mM NaCl, 10% glycerol and 20% D 2 O. Here, we increased salt concentration and utilized glycerol to avoid LLPS of TDP-43 LCD with Hsp70. Each NMR sample was made with a volume of 500 μL, containing 15 N-TDP-43 LCD (20 μM) desalted from denature buffer freshly with/without Hsp70 WT and its variants as indicated. Bruker standard pulse sequence (hsqcetfpf3gpsi) was used to collect the 2D 1 H-15 N HSQC spectrum with 16 scans. And 2048 × 160 complex points were used for 1 H (14 ppm) and 15 N (21 ppm) dimension, respectively. All NMR data were processed by NMRpipe and analysed by SPARK (Delaglio et al., 1995; Lee et al., 2015) .
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