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13 protocols using cefazolin

1

Antibiotic Susceptibility Testing Protocol

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The Kirby–Bauer disc diffusion test was performed using Mueller–Hinton agar plates (Becton, Dickenson and Company) according to Clinical and Laboratory Standard Institute standards [23] using the following antimicrobials: ampicillin (10 µg), cefazolin (30 µg), kanamycin (30 µg), streptomycin (10 µg), tetracycline (30 µg), chloramphenicol (30 µg), fosfomycin (50 µg), colistin (10 µg), sulfamethizole (250 µg), and nalidixic acid (30 µg) (Becton, Dickinson and Company).
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2

Antimicrobial Susceptibility Testing Protocol

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The antimicrobial susceptibility testing was done following a previously reported method [26 (link)]. Briefly, the pure colonies obtained from blood agar were resuspended in bacterial suspensions, and were made depositing two or three medium-sized colonies (2 to 3 mm) in BBL Crystal Inoculum Broth (Becton Dickinson; Franklin Lakes, NJ, USA). The obtained inoculum was adjusted while using a Mac Farland 0.5 reading (Expected CFU/mL 1.5 × 108), and cultured in Müeller Hinton 150 × 15 mm2 media BD BBL (Becton Dickinson Franklin Lakes, NJ, USA). The antibiotic discs were applied with the Sensi-Disc Designer Dispenser System. The antibiotics panel was conformed by ampicillin (10 µg), ampicillin/sulbactam (10/10 µg), mezlocillin (75 µg), carbenicillin (100 µg), piperacillin/tazobactam (100/10 µg), cefazolin (30 µg), cefaclor (30 µg), cefepime (30 µg), cefoperazone (75 µg), and cefotetan (30 µg) from Becton Dickinson (Franklin Lakes, NJ, USA), Müeller Hinton medium were incubated at 37 °C for 24 h in both aerobic and anaerobic conditions. In anaerobic conditions, the media were placed in an anaerobic jar (BD BBL™ GasPak™), with a C02 gas generators envelope (BD BBL™) and another envelope of BD BBL™ GasPak™ anaerobic indicator placed on them.
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3

Antimicrobial Susceptibility Testing of Isolates

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Antimicrobial susceptibility testing (AST) was conducted on the isolates using the disk-diffusion method according to the guidelines of the Clinical and Laboratory Standards Institute (CLSI) [11 ]. Antimicrobial substances included ampicillin, amoxicillin/clavulanic acid, cefazolin, cefotaxime, cefepime, nalidixic acid, ciprofloxacin, sulfamethoxazole-trimethoprim, fosfomycin, azithromycin, nitrofurantoin, streptomycin, kanamycin, gentamicin, chloramphenicol, and tetracycline (Becton, Dickinson, Heidelberg, Germany). Results were interpreted according to CLSI breakpoints for human clinical isolates [11 ]. Multidrug resistance (MDR) was defined as resistance to three or more classes of antimicrobials, counting beta-lactams as one class.
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4

Antimicrobial Susceptibility Testing Protocol

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Antimicrobial susceptibility testing was carried out by the Kirby–Bauer method under the Clinical and Laboratory Standards Institute protocol (NCCLS standards). The pure colonies obtained from blood agar were resuspended in bacterial suspensions were made depositing two or three medium-sized colonies (2 to 3 mm) in BBL Crystal Inoculum Broth (Becton Dickinson; Franklin Lakes, NJ, USA). The obtained inoculum was adjusted while using a Mac Farland 0.5 reading (Expected CFU/mL 1.5 × 108), and cultured in Müeller Hinton 150 × 15 mm2 media BD BBL (Becton Dickinson Franklin Lakes, NJ, USA). The antibiotic discs were applied with the Sensi-Disc Designer Dispenser System. The antibiotics panel was conformed by ampicillin (10 µg), ampicillin/sulbactam (10/10 µg), mezlocillin (75 µg), carbenicillin (100 µg), piperacillin/tazobactam (100/10 µg), cefazolin (30 µg), cefaclor (30 µg), cefepime (30 µg), cefoperazone (75 µg), and cefotetan (30 µg) from Becton Dickinson (Franklin Lakes, NJ, USA)
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5

Antibiotic Susceptibility Testing Protocol

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Overnight cultures were diluted and grown in 5 mL of BHI to OD620 ≈ 0.1. 100 μL of cultures were mixed with 3 mL of nutrient-broth soft agar [0.8% (w/v) nutrient broth and 0.7% (w/v) Bacto Agar (Difco)] and poured onto TSAII-BA plates. After 15 min, antibiotics disks were placed at the middle of plates, which were incubated at 37°C in an atmosphere of 5% CO2 overnight for 16 h. Diameters of zones of growth inhibition were measured with a ruler, and P-values were calculated by unpaired t-test in GraphPad Prism. Antibiotic disks were from Becton, Dickinson Co.: cefotaxime (30 μg); cefazolin (30 μg); cefamandole (30 μg); ceftazidime (30 μg); amdinocillin (10 μg); vancomycin (30 μg); gentamicin (120 μg); and tetracycline (30 μg).
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6

Antimicrobial Susceptibility Testing Protocol

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Antimicrobial susceptibility testing was performed using the disk-diffusion method and the antibiotics ampicillin (AM), amoxicillin-clavulanic acid (AMC), cefazolin (CZ), cefotaxime (CTX), cefepime (FEP), nalidixic acid (NA), ciprofloxacin (CIP), gentamicin (GM), kanamycin (K), streptomycin (S), sulfamethoxazole/trimethoprim (SXT), fosfomycin (FOS), azithromycin (AZM), nitrofurantoin (F/M), chloramphenicol (C) and tetracycline (T) (Becton Dickinson, Heidelberg, Germany). Results were interpreted according to Clinical and Laboratory Standards Institute (CLSI) performance standards [28 ].
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7

Antimicrobial Susceptibility Testing of Enterobacteriaceae

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Antimicrobial susceptibility testing was performed for Enterobacteriaceae in accordance with the Clinical and Laboratory Standards Institute (CLSI) performance standards [61 ] using the disk-diffusion method on Mueller Hinton plates (Oxoid, Hampshire, UK) and the antibiotics ampicillin (AM), amoxicillin with clavulanic acid (AMC), azithromycin (AZM), cefazolin (CZ), cefepime (FEP), cefotaxime (CTX), chloramphenicol (C), ciprofloxacin (CIP), fosfomycin (FOS), gentamicin (G), kanamycin (K), nalidixic acid (NA), nitrofurantoin (F/M), streptomycin (S), sulfamethoxazole trimethoprim (SXT) and tetracycline (TE) (Becton Dickinson, Allschwil, Switzerland). Results were interpreted according to CLSI standards [61 ]. For azithromycin, an inhibition zone of ≤12 mm was interpreted as resistant.
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8

Antimicrobial Susceptibility Testing of Citrobacter and E. coli

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AST was performed using the disk diffusion method according to the guidelines of the Clinical and Laboratory Standards Institute (Clinical and Laboratory Standards Institute, 2020 ). Antimicrobial substances included ampicillin, amoxicillin/clavulanic acid, cefazolin, cefotaxime, cefepime, nalidixic acid, ciprofloxacin, sulfamethoxazole‐trimethoprim, fosfomycin, azithromycin, nitrofurantoin, streptomycin, kanamycin, gentamicin, chloramphenicol, and tetracycline (Becton, Dickinson). Results were interpreted according to CLSI breakpoints for human clinical isolates (Clinical and Laboratory Standards Institute, 2020 ). In the absence of clinical breakpoints for azithromycin resistance in Citrobacter spp. and E. coli, a zone diameter of ≤12 mm was interpreted as resistant, based on data reported by Meerwein et al. (2020 ).
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9

Antimicrobial Susceptibility Testing Protocol

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Antimicrobial susceptibility testing (AST) was performed using the disc-diffusion method according to the guidelines of the Clinical and Laboratory Standards Institute (CLSI) [31 ], and the antibiotics ampicillin (AM), amoxicillin with clavulanic acid (AMC), azithromycin (AZM), cefazolin (CZ), cefepime (FEP), cefotaxime (CTX), chloramphenicol (C), ciprofloxacin (CIP), fosfomycin (FOS), gentamicin (G), kanamycin (K), nalidixic acid (NA), nitrofurantoin (F/M), streptomycin (S), sulfamethoxazole/trimethoprim (SXT) and tetracycline (TE) (Becton Dickinson, Allschwil, Switzerland). Results were interpreted according to CLSI performance standards [31 ]. For azithromycin, an inhibition zone of less than or equal to 12 mm was interpreted as resistant. For isolates harbouring mcr-1, the minimum inhibitory concentration (MIC) of colistin was determined by broth microdilution according to the European Committee on Antimicrobial Susceptibility Testing (EUCAST), 2019 (eucast.org). The results were interpreted according to the breakpoints suggested by EUCAST for Enterobacterales (susceptible, MIC ≤ 2 mg l−1; resistant, MIC > 2 mg l−1).
Isolates displaying resistance to three or more classes of antimicrobials were defined as multidrug-resistant (MDR), as proposed by Magiorakos et al. [32 (link)], counting β-lactams as one class.
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10

Detection and Characterization of ESBL Genes

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The presence of blaESBL genes was established by PCR, and amplicons were sequenced as described previously using primers listed in Table S1 in Supplementary Material (10 (link)–12 (link)). For the detection of the CTX-M-25 enzyme group, the newly designed primers Gr. 25 CTX-M fw CCTGTGTTTCGCTGCTGTTGG and Gr. 25 CTX-M rv GGCTCTCTGCCTTCGGCTCC, were used.
Antimicrobial susceptibility testing was performed according to Clinical and Laboratory Standards Institute (CLSI) performance standards (13 ), using the disk-diffusion method and the antibiotics ampicillin (AM), amoxicillin with clavulanic acid (AMC), azithromycin (AZM), cefazolin, cefepime, CTX, chloramphenicol (C), ciprofloxacin (CIP), fosfomycin (FOS), gentamicin (G), kanamycin (K), nalidixic acid (NA), nitrofurantoin (F/M), streptomycin (S), SXT, and tetracycline (TE) (Becton Dickinson, Allschwil, Switzerland). Results were interpreted according to CLSI standards (13 ). For azithromycin, an inhibition zone of ≤12 mm was interpreted as resistant. Isolates displaying resistance to three or more classes of antimicrobials (counting β-lactams as one class) were defined as multidrug-resistant (MDR).
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