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138 protocols using rm2016

1

Paraffin-Embedded Tissue Nissl Staining

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The specimens (n = 3/group) were embedded in paraffin and then cut using a microtome (RM2016, Leica, Germany) to obtain 4-μm-thick sections. The sections were dewaxed and dehydrated with xylene, a graded series of alcohol, and distilled water. The samples were treated with a Nissl staining solution (C0117, Beyotime Biotechnology, Jiangsu, China) for 5 min, washed, dehydrated again, and mounted with neutral balsam.
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2

Histological and Ultrastructural Analysis of Gastrocnemius Tissue

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Gastrocnemius tissues were rinsed with 0.9% saline and fixed with 4% paraformaldehyde for 24 h. Then, tissues were embedded in paraffin (JB-P5, Junjiedianzi, China) and cut into slices (RM 2016, Leica, Germany). After the gradient was dehydrated to drain xylene, tissues were stained in hematoxylin for 3–5 min. They were washed in running tap water, dipped in 1% acid alcohol for differentiation, washed again, and stained in 1% eosin. Before being sealed with neutral balsam, tissues were treated with alcohols and xylene. In the end, tissues were placed on microscope slides for H&E examination (Nikon Eclipse E100, Nikon, Japan).
Tissues were fixed with 2.5% glutaraldehyde for 2 h immediately at 4°C, rinsed in PBS, and then fixed with 1% osmium tetroxide for 2 h at room temperature. Then, they were rinsed, dried, infiltrated, and embedded for 48 h at 60°C at last and cut into slices. After staining, the samples were observed and photographed by a transmission electron microscope (JEM-1400, JEOL, Japan).
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3

Histological Analysis of Brain Tissue Damage

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Mice were anesthetized by 1% isoflurane (R510-22, RWD, China) using a gas anesthesia machine (R540IP, RWD, China) and subsequently perfused by injecting 4% paraformaldehyde (60 ml) through the heart. The brain was removed and fixed with 4% paraformaldehyde. The left damaged brain tissue was dissected to embed in paraffin and then sectioned using a microtome (RM2016, Leica, Germany) with a thickness of 5 μm. The sections were baked in an oven at 60 °C and dewaxed, and then stained with Harris hematoxylin for 3–8 min. After this, the sections were stained with eosin for 1–3 min after washing twice with tap water. Finally, the sections were dehydrated twice with 95% alcohol (5 min each) and washed three times with xylene (5 min each), and then fixed with natural gum. All sections were scanned with a digital pathology scanner system (Pannoramic 250, 3D HISTECH Ltd., Hungary), and 5 fields in injured areas were randomly selected for analysis. The output digital pathological images were 400x enlarged.
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4

Histological Analysis of Abnormal Neurons

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Sections of brain tissue (five slices per sample) were collected, fixed, dehydrated, and transparently rendered in ethanol and xylene solution. The wax-soaked tissue is embedded in the embedding machine. Place the trimmed wax block cool at −20 °C freezing table, and slice the modified tissue chip wax block on the paraffin slicer(Leica RM2016 Shanghai, China), the slice thickness is 4 μm. Stain sections with Hematoxylin (HE dye solution set, Servicebio, Wuhan, China) solution for 3–5 min, and rinse with tap water. Then treat the section with hematoxylin differentiation solution, and rinse with tap water. Treat the section with Hematoxylin Scott Tap Bluing, and rinse with tap water. A total of 85% ethanol (SUPELCO, 1009832500) for 5 min; 95% ethanol for 5 min; finally stain sections with eosin dye for 5 min. Photomicrographs were captured with a light microscope (Nikon Eclipse E100, Tokyo, Japan). The nucleus was blue-purple, and the cytoplasm was red.
To calculate the number of abnormal neurons, three brain slices were randomly selected, and five nonoverlapping high-power fields (×400) in the hippocampal CA1 sector were randomly selected in each slice. Then, the number of abnormal neurons in the regions was calculated. By calculating the average number of abnormal neurons, statistical analysis was acquired for each group of samples.
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5

Histological Analysis of Sea Cucumber Body Wall

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The boiled sea cucumber body wall was cut to a size of 0.5 cm × 0.5 cm × 0.5 cm, and placed in a fixative containing 10% formaldehyde at 4 °C for 18 h. The specimens were then dehydrated in xylene (20 min-xylene, 20 min-xylene, 5 min-anhydrous ethanol, 5 min-anhydrous ethanol, 5 min-75% alcohol) and washed with tap water. The above procedure was realized through an automatic dehydration machine (Leica TP 1020, Germany) running according to an artificially set program. The samples were dehydrated by a graded ethanol series and embedded in paraffin. Next, the boiled tissues were cut into slices 20 μm thick with a paraffin slicer (Leica RM 2016, Germany). The tissue slice was stained by being subjected to V-G staining (mixing saturated picric acid and acidic magenta 9:1 to form VG dye) for 1 min followed by washing with tap water, and rapid dehydration of anhydrous ethanol. Then, the slices were put into a xylene transparent, neutral gum sealing (transparent sealing: two cylinders of clean xylene transparent for 20 s and 5 min), and neutral gum wet sealing. The microstructures were imaged using a NIKON ECLIPSE E100 optical microscope (NIKON ECLIPSE E100, Japan).
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6

Ultrastructural Analysis of Autophagosomes

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Transfected cells were fixed with 2.5% glutaraldehyde (G105907, Aladdin, China) at 4°C overnight, followed by 2% osmium tetroxide (18466, TED PELLA, USA). After the cells had been stained with 1% uranyl acetate (CD106833, Codow, China), they were dehydrated with a gradient concentration of ethanol (100092683, Sinopharm, China) and acetone (10000418, Sinopharm), embedded in epoxy resin (XW00000020, Sinopharm), and sectioned using an ultramicrotome (RM2016, Leica, China). Autophagosomes were observed using TEM (Hitachi, Tokyo, Japan).
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7

Broiler Intestinal Morphology Analysis

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Fixed duodenum, jejunum and ileum tissues of eight broilers per feeding group were cut into a longitudinal cross section and embedded in paraffin wax. The tissues (5 μm) were then sectioned (Leica, RM2016, Shanghai) and stained with haematoxylin and eosin (H&E) for morphological measurements. Each slide was captured with a Nikon DS-U3 digital camera coupled to a Nikon Eclipse E100. NIS-Elements F software was used for image capturing. Morphometric analysis was performed by Image-Pro Plus 6.0 software (Media Cybernetics, Inc., Rockville, MD, USA). The evaluated morphometric indices were villus height (VH, from the tip of the villus to the crypt), crypt depth (CD, from the base of the villus to the submucosa) and villus height to crypt depth ratio (VCR) [27 (link)]. Morphometric measurements were performed on 10 well-oriented and intact villi and 10 crypts chosen from the duodenum, jejunum and ileum [28 (link)]. Muscularis thickness was measured at the middle of the villus and crypt. All the indicators correspond to each other. Goblet cells were read at 200 times magnification. The number of goblet cells in 3 villi was read from each section, and the length of the villi epithelium was measured. Finally, the number of goblet cells per unit length was calculated.
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8

Microscopic Structure Analysis of Plant Tissues

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Fresh samples of RT, LF, SC and IN were quickly sliced horizontally and vertically and placed into FAA fixative solution for 24 h, Then, the samples were dehydrated by a gradient series of ethanol and embedded into paraffin blocks for microscopic structure observation. The samples were cut with a LEICA RM2016 microtome (LEICA, Solms, German), deparaffinized, hydrated in water(xylene, 20 min, twice,100% alcohol, 5 min, twice, 75% alcohol, 5 min, and rinsed in water), and stained with I-KI for a starch grain analysis, or fast green for a cutinized or cellulosic tissue analysis. Each slice was analysed using a Nikon Eclipse CI microscope and then photographed using the Nikon DS-U3 imaging system (Nikon, Tokyo, Japan).
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9

Histological Analysis of Placental Tissues

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The placental tissues preserved in 4% formalin were obtained, dehydrated in gradient alcohol (75, 80, 90, 95 and 100%) twice for 1.5 h each series, and cleared with xylene twice for 8 min each time. Subsequently, the tissues were embedded in paraffin and sliced into 5-7-µm-thick slices using a microtome (RM2016; Leica, Shanghai, China). The slices were then incubated at 55°C, deparaffinized in xylene and hydrated with gradient alcohol at concentrations of 100, 95, 85 and 75% (3 min each concentration). The tissues were then stained with hematoxylin for 8 min, washed with water for 2 min, differentiated with hydrochloric alcohol for 5 sec, and washed with water for 2 min. The tissues were treated with 0.25% ammonia for 1 min and washed with water for 2 min. Subsequently, the tissues were stained using eosin for 30 sec and washed with water for 2 min prior to dehydration twice with a gradient alcohol series (85, 95 and 100%; 2 min for each) and xylene clearing twice (5 min each). When the staining was completed, the sample slides were mounted using neutral balsam and sealed with clean cover slips. The histopathological changes in the placenta were observed under a microscope (XSP-2C; Bingyu Optical Instrument Co., Ltd., Shanghai, China).
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10

Histological Analysis of Zebrafish Heart

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For hematoxylin and eosin (H&E) staining, zebrafish was anesthetized, their hearts were extracted and fixed in 10% formalin at 4°C overnight. Samples were then dehydrated, infiltrated, embedded in paraffin, sliced into 5 μm thick by pathologic microtome (RM2016, Leica). Tissue sections were then stained by H&E as described previously (54 (link)).
For wheat germ agglutinin (WGA) (Sigma) immunofluorescent staining, heart tissues were fixed in 4% paraformaldehyde at 4°C overnight, then washed with PBS and incubated in 30% sucrose solution at 4°C overnight. The samples were frozen in OCT compound at −80°C, and 10 μm cryo-sections were cut using a CM1950 cryostat (Leica). Frozen sections were washed in PBS for 10 min before incubated with FITC-conjugated WGA (1:50 in PBS, 1 mg/ml stock solution) for 1 h at room temperature. The nuclei were stained with DAPI (1:1000 in PBS, 10 μM stock solution, Sigma) for 10 min at room temperature (55 (link),56 (link)). Fluorescence was visualized with a confocal microscope (OLYMPUS, FV1000).
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