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99 protocols using goat anti rabbit igg

1

Quantifying Synaptic Proteins by Western Blot

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Proteins were applied to SDS–PAGE and electroblotted on a polyvinylidene difluoride membrane. Immunoblotting analysis was performed using a chemiluminescence detection kit. The relative levels of immunoreactivity were determined by densitometry using the ImageJ software. Primary antibodies: GluA1 (1:1,000; Millipore, 04-855), GluA1p-Ser845 (1:1,000; Millipore, AB5849; RRID: AB_92079), PSD-95 (1:1,000; Millipore, MAB1598; RRID: AB_94278), GluN2A (1:250; Santa Cruz, sc-1468; RRID: AB_670223), Actin (1:25,000; Sigma-Aldrich, A5060; RRID: AB_476738), D1 (1:1,000, Abcam, ab20066; RRID: AB_445306), D2 (1:1,000, Millipore, AB5084P; RRID: AB_2094980), αCaMKII (1:1,000, ThermoFisher, #13-7300; RRID: AB_2533032), TH (1:1,000, Abcam, Ab112; RRID: AB_297840), hAPP695 (APPswe, 1:500, Biolegend, #803001; RRID: AB_2564653). Secondary antibodies: goat anti-mouse IgG (1:3,000; Bio-Rad; RRID: AB_11125936), goat anti-rabbit IgG (1:3,000; Bio-Rad; RRID: AB_11125142) and rabbit anti-goat IgG (1:3,000; Bio-Rad; RRID: AB_11125144).
Membranes were stripped using Re-Blot Plus Strong Solution (Millipore) for 15 min at room temperature. Full blots are shown in Supplementary Information.
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2

Western Blot Analysis of LCN-2 Protein

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Western blot analysis was performed as described previously 19 (link). Briefly, mice were perfused with pH 7.4 phosphate-buffered saline (PBS, 0.1mmol/L) after euthanasia. Then samples of the contralateral and ipsilateral basal ganglia tissues were obtained. The concentrations of protein were calculated using a Bio-Rad protein assay kit (Hercules, CA) and 30 μg protein of each sample was used for the Western blot analysis. The primary Abs were polyclonal goat anti-LCN2 (R&D System, 1:200 dilution), and rabbit anti-β-actin (1:20000, dilution, Cell Signaling). The secondary Abs were rabbit anti-goat IgG (Bio-Rad, 1:2000 dilution) and goat anti-rabbit IgG (Bio-Rad, 1:5000 dilution). Western blots were analyzed using the enhanced chemiluminescence system (Amersham) followed by exposure to Kodak X-OMAT film. Analysis of the relative densities of bands was obtained using NIH Image J. LCN-2 protein levels were normalized with beta-actin.
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3

Immunoblotting Analysis of Protein Levels

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Proteins were applied to SDS-PAGE and electroblotted on a polyvinylidene difluoride membrane. Immunoblotting analysis was performed using a chemiluminescence detection kit. The relative levels of immunoreactivity were determined by densitometry using the ImageJ software.
Primary antibodies: VAChT (1:500, Synaptic Systems, #139103); GFAP (1:1000, Dako, #Z0334); GAPDH (1:3000, Calbiochem, #CB1001). Secondary antibodies: goat anti-mouse IgG (1:3,000; Bio-Rad), goat anti-rabbit IgG (1:3,000; Bio-Rad), rabbit anti-goat IgG (1:3,000; Bio-Rad).
Membranes were stripped using Re-Blot Plus Strong Solution (Millipore) for 15 min at room temperature.
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4

Quantifying Apoptosis in 4T1 Cells

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4T1 cells were seeded at 1x106 cells per 35 mm dish. Next day, the cells were infected for 1 h at the indicated MOI of Ad virus. Following a 48 or 72 h incubation, whole-cell lysates were collected using 2 × SDS/PAGE protein loading buffer (62.5 mm Tris HCl pH 6.8, 25% glycerol, 2% SDS, 0.01% bromophenol blue, 5% β-mercaptoethanol). Samples were boiled for 5 min, separated by electrophoresis on a 15% SDS-polyacrylamide gel, and transferred onto a polyvinylidene fluoride (PVDF) membrane (Millipore, Etobicoke, ON, Canada). The resulting membrane was probed with a mouse HA tag monoclonal antibody (1:10 000, Cell Signaling (Beverly, MA, USA) #2367), rabbit cleaved caspase-3 monoclonal antibody (1:1000, Cell Signaling #9664) or full-length caspase-3 antibody (1:1000, Cell Signaling #9662) and 1:5000 goat anti-rabbit IgG (Bio-Rad, Mississauga, ON, Canada, #170-6515) or goat anti-mouse IgG antibody conjugated to horseradish peroxidase (HRP) (1:10 000, Bio-Rad #170-6516). The membrane was also probed with antibody to α-tubulin to confirm equal loading (1:5000 rabbit α-tubulin antibody, AbCam (Toronto, ON, Canada) #ab15246, 1:5000 goat anti-rabbit IgG conjugated to HRP, Bio-Rad #170-6515). Blots were developed using the Pierce Enhanced Chemilumescent (ECL) Western Blotting Substrate (Thermo Scientific, Waltham, MA, USA).
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5

Immunohistochemical Analysis of Neuroinflammatory Markers

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Brains were postfixed in 4% formaldehyde and immersed in 30% sucrose in 0.1 M cold phosphate-buffered saline (pH 7.4) for 2–3 days at 4°C. They were then embedded and sliced into 18 μm-thick coronal sections on a cryostat. Immunohistochemical staining was performed using the avidin–biotin complex technique. Sections were incubated in either 1:10 rabbit or goat serum (Vector Laboratories) for 30 min and then incubated overnight with primary antibody. The antibodies were: polyclonal goat anti-LCN2 (1:200 dilution, B&D System), polyclonal rabbit antiglial fibrillary acidic protein (GFAP; 1:1000 dilution, Millipore) and polyclonal goat anti-Iba-1 (1:400 dilution, Abcam). The secondary antibodies were rabbit antigoat IgG (Bio-Rad; 1:1000) or goat antirabbit IgG (Bio-Rad; 1:1000). Negative immunohistochemical control procedures included omission of the primary antibody.
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6

Western Blot Analysis of LCN2, Albumin, and DARPP-32

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Western blot analysis was performed as previously described15 (link). Briefly, mice were perfused with 0.1mmol/L phosphate-buffered saline (pH 7.4) after euthanasia and the ipsi- and contralateral basal ganglia were sampled. Protein concentration was determined by Bio-Rad protein assay kit (Hercules, CA, USA), and 50µg protein of each sample were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto a hybond-C pure nitrocellulose membrane (Amersham, Pittsburgh, PA, USA). Membranes were probed with the following primary antibodies: polyclonal goat anti-LCN2 IgG (R&D System; 1:200 dilution), goat anti-albumin IgG (Bathyl Laboratories; 1:10,000 dilution), and rabbit anti-DARPP-32 IgG (Cell Signaling Technology; 1:10,000 dilution). The secondary antibodies were rabbit anti-goat IgG and goat anti-rabbit IgG (1:2,000 and 1:2,500 dilution; Bio-Rad). Antigen-antibody complexes were visualized with the ECL chemiluminescence system (Amersham) and exposed to Kodak X-OMAT film. The relative densities of bands were analyzed with NIH Image J.
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7

SDS-PAGE and Western Blot Analysis of Salivary Gland Proteins

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Salivary glands (20 glands per well) were separated by SDS-PAGE on 12% polyacrylamide gels under denaturing conditions using the Mini-ATTO apparatus (Biogen). Proteins were either stained by Coomassie brilliant Blue (Bio-Rad) or transferred to PVDF membranes that were cut into strips (area corresponding to one well of the 12 well-comb was cut into 4 strips) and blocked overnight at 4°C with 5% milk in Tris-Tw buffer (20 mM Tris, 150 mM NaCl, 0.1% Tween® 20; pH 7.4) at 4°C. After washing in Tris-Tw, membranes were incubated for 1 h with diluted sera (mice: 1:100; rabbit: 1:50). The strips were further washed and incubated with peroxidase conjugated goat anti-mouse IgG (1:500, AbD Serotec) or goat anti-rabbit IgG (1:2.500, AbD Serotec). Immunogenic protein bands were visualized by substrate solution with diaminobenzidine and reaction was stopped with distilled water.
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8

Anti-Saliva Antibody Response Quantification

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Specific anti-P. perniciosus saliva antibody response was measured by indirect ELISA, according to Rohoušová et al. with minor modifications [21 (link)]. Sera were diluted (1:50) in 2% skimmed milk and incubated at 37°C during 3 h. For mouse IgG subtype studies (IgG and IgG2a) sera were diluted 1:200. Peroxidase-conjugated antibodies were incubated for 1 h at 37°C (goat anti-mouse IgG 1:500, goat anti-mouse IgG1 1:10.000, goat anti-mouse IgG2a 1:1.000, goat anti-rabbit IgG 1:2.500; AbD Serotec and goat anti-rabbit IgM 1:20.000; Bethyl Laboratories). Plates were developed with orthophenylendiamine in McIlwein phosphate-citrate buffer (pH 5.5) in the presence of H2O2. The reaction was stopped with 10% H2SO4 and absorbance was measured at 492 nm using an ELISA reader (ELx800, BioTek, Winooski, VT). Each serum was tested in duplicate. The control wells were coated with SGH, but no serum was added. IgG antibody levels were reported as adjusted optical density (aOD), calculated for each serum as a mean OD value of the duplicated wells minus the OD value of the control wells. ELISA experiments were repeated at least twice.
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9

Western Blot Analysis of CYP Levels

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We used 30–50 μg of microsomal protein for western blots to measure CYP levels. Proteins were separated by polyacrylamide gel electrophoresis (SDS-PAGE) in a 10% gel, and transferred to a 0.45-μm polyvinylidene fluoride (PVDF) membrane, then the blot was blocked with 5% skim milk and 0.3% Tween 20 dissolved in phosphate-buffered saline (PBS). The membrane was washed in PBS three times for 10 min and incubated for 1.5 h at 37°C with primary rabbit anti-mouse antibodies for recognizing CYP1A1/2 and CYP2B (clone 14H5 and 12F10, respectively), which were obtained from Dr Grishanova [37 ] and diluted 1:20 in TBS. A rabbit anti-mouse β-actin primary antibody (diluted 1:500; Sigma-Aldrich, St. Louis, MO) was used to ensure equal loading of samples. Goat anti-rabbit IgG (Bio-Rad) alkaline-phosphatase-conjugated secondary antibodies were used to detect the primary antibodies to CYP1A1/2, CYP2B, and β-actin. The protein bands were visualized colorimetrically with alkaline-phosphatase fastTM Tablets (Sigma-Aldrich) as substrates, according to the manufacturer’s directions. Colorimetric blots were scanned on a Bio-Rad VersaDoc 4000 Imaging System (Bio-Rad), and the bands were quantified in the ImageJ software (NIH, Bethesda, MD, USA). The experiments were performed using equipment of center of “Proteomic analysis” of the Institute of Molecular Biology and Biophysics (Novosibirsk, Russia).
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10

Evaluation of Membrane Transporter Proteins

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Glibenclamide (G0639), Gly-Phe (G2752), and Gly-Sar (G3127) were purchased from Millipore Sigma. Glycyl-L-proline (Gly-Pro, 405935) was purchased from Frontier Scientific. Puromycin dihydrochloride (A11138), Pierce Western Blot reagents, and Applied Biosystems qPCR reagents were purchased from ThermoFisher Scientific.
The antibodies specific for hSLC15A1 and hSLC15A2 were generously supplied by David E. Smith, College of Pharmacy, University of Michigan. Other antibodies used were: anti-β-actin (Santa Cruz Biotechnology, sc-47778), anti-LAMP-1 (Abcam, ab25630), anti-MMP9 (Cell Signaling, D6O3H), anti-MMP13 (Cell Signaling, E4W3T), anti-MMP16 (Abcam, ab73877), anti-DPP4/CD26 (Cell Signaling, D6D8K), goat anti-rabbit IgG (Bio-Rad, 170-6515), goat anti-mouse IgG (Bio-Rad, 170-6516), goat anti-mouse IgG alexa fluor 488 (ThermoFisher, A-11029), goat anti-rabbit IgG alexa fluor 594 (ThermoFisher, A-11037), goat anti-rabbit IgG alexa fluor 488 (Life Technologies Corp, A11008), goat anti-mouse IgG alexa fluor 647 (Life Technologies Corp., 647), and ProLong Diamond Antifade Mountant with DAPI (Life Technologies Corp., P36962),
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