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10 protocols using histobond slides

1

Spinal Cord Tissue Sectioning for Mice

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For mice that received a single intrathecal injection, spinal cords were cut 0.5 cm rostral and 0.5 cm caudal to the injection site. The 1 cm segments were then embedded and frozen in Tissue Tek® (VWR International). Spinal cords were sectioned sagittally at 20 µm thickness using a cryostat (Leica), then slide-mounted onto Histobond® slides (VWR International). Brains were sectioned in the coronal plane at 20 µm thickness and collected free-floating in 0.01% sodium azide in PBS.
For mice that received a lysolecithin injection followed by intrathecal delivery of CSF, an 8 mm segment of cervical spinal cord was embedded and frozen in Tissue Tek®. Spinal cords were sectioned coronally at 20 µm thickness using a cryostat, then slide-mounted onto Histobond® slides.
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2

Confirming Bilateral Cannulae Placements in Rat Brains

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Four hours after the onset of the restraint stress in Experiment 3, rats were euthanized with sodium pentobarbital (Fatal Plus, 0.2 ml i.v., Vortech Pharmaceuticals, Dearborn, MI, USA) and brains were extracted and flash-frozen on dry ice. The brains were serially sectioned at 30 µm for cannulae placement confirmation in the DMH (−2.6 mm to −3.8 mm bregma) using a cryostat (CM 1950, North Central Instruments, Plymouth, MN, USA) at −23 °C. Sections for cannulae placement confirmation were mounted on HistoBond slides (Cat No. 16004-406, VWR) in the cryostat and stained using cresyl violet to assist in the visualization of structures. Rats included in the analysis had confirmed bilateral cannulae placements in the DMH (Figure 2). The limits of the DMH were as defined by Fontes and colleagues (Fontes et al., 2011 (link)). Among sham-ADX rats, after confirming cannulae placements, eighteen of twenty-four rats were determined to be bilateral hits (sham-ADX/vehicle, n = 10; sham-ADX/CORT, n = 8).
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3

Quantifying Hepatic PIP3 Levels in Mice

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Mice were injected i.p. with either vehicle (NaCl 0.9%) or insulin (0.75 U/kg body weight; Humalog) and 15 min after the injection, were anesthetized with isoflurane and perfused with 4 % paraformaldehyde. The livers were then explanted and kept overnight in paraformaldehyde. The samples were then transferred to a 30% sucrose solution to cryoprotect the tissue and thereafter the samples were imbedded in TissueTek and sectioned at 12 µm using a cryostat. Sections were mounted onto Histobond+ slides (VWR).
PIP3 levels in the liver were determined using the Mouse on Mouse (M.O.M.) detection Kit following the manufacturer’s protocol (Vector Laboratories) as previously described19 (link). Samples were blocked with the MOM Mouse IgG blocking reagent for 1h and treated with MOM diluent for 5 min. The slides were then incubated for 30 min with the primary antibody (mouse anti-PIP3; Echelon Biosciences Inc.) diluted 1:10 in MOM mouse diluent. Following this, samples were incubated for 10 min with the MOM biotinylated anti-mouse IgG solution and the secondary antibody (DyLight Streptavidin 488: Vector Laboratories) was added for 1h. Finally, slides were coverslipped with Vectashield and observed with a confocal microscope (Zeiss LSM700).
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4

Tissue Preparation for Histological Analysis

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Mice were sacrificed using an overdose of ketamine (300 mg/kg) and xylazine (30 mg/kg) and were perfused transcardially with phosphate buffered saline (PBS) followed by 4% paraformaldehyde in 0.1 M PBS, pH 7.4. Spinal cords and brains were dissected out, postfixed in 4% paraformaldehyde overnight and then placed in 30% sucrose overnight for cryoprotection.
Cervical spinal cords were cut 0.5 cm rostral and 0.5 cm caudal to the injection site, and 1 cm of thoracic spinal cords were also collected. The 1 cm segments were then embedded and frozen in Tissue Tek® (VWR International, PA). Spinal cords were sectioned sagittally at 20 µm thickness using a cryostat (Leica) and then slide-mounted onto Histobond® slides (VWR International, PA). The anatomical orientation of tissue sections, as well as the order and position in which they were mounted onto the slides were kept consistent to facilitate unbiased histological comparisons, as described in further detail below. Brains were sectioned coronally at 30 µm and free-floating sections were stored in 0.01% sodium azide in PBS.
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5

LM-seq of Maize Ear Development

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LM-seq was performed largely as described in (77 ). Briefly, ear primordia were fixed overnight in 3.5% paraformaldehyde, dehydrated through an ethanol series, and transferred to Histoclear (National Diagnostics) before embedding in paraffin. Embedded samples were sectioned at 5 μm and mounted onto charged HistoBond slides (VWR International). The slides were then subjected to laser microdissection by using a PALM microbeam system (Zeiss). Three biological replicates were prepared per genotype (B73, tsh1, tsh4, and tsh1 tsh4). Approximately 750 μm of cells was harvested for each biological replicate. RNA was extracted from microdissected tissues with the PicoPure RNA Isolation Kit (Life Technologies, Carlsbad, CA) and in vitro amplified using TargetAmp 2-round aRNA Amplification Kit 2.0 (Epicentre, Madison, WI). RNA-seq libraries were constructed using the TruSeq Stranded mRNA Library Prep Kit and quantified on an Agilent bioanalyzer (Agilent), and single-end 125–base pair (bp) sequences were generated on Illumina HiSeq 2500.
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6

Histological Analysis of Muscle Atrophy

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Whole gastrocnemius and whole tibialis anterior muscles were removed from both hindlimbs from the implant control group, SFN neurectomy legs, and contralateral control, and BTX injected legs and contralateral control and weighed. Muscle histology was then produced the same as in a previous study42 (link). Briefly, the gastrocnemius was fixed in 4% paraformaldehyde, dehydrated, and embedded in paraffin. Muscles were cross-sectioned ~0.5 cm from the margins. Sections (5 μm) were placed on Histobond slides (VWR, Radnor, PA, USA), deparaffinized and rehydrated, and stained with Masson’s trichrome using Weigert’s hematoxylin (Sigma-Aldrich, St. Louis, MO, USA), Biebrich scarlet-acid fuschin (Sigma-Aldrich), and aniline blue (Sigma-Aldrich). Coverslips were mounted with xylene-based mounting media and allowed to dry flat before imaging.
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7

Immunohistochemical Analysis of Rodent Brain

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After behavioral testing the rats were sacrificed by injecting 100 mg/kg ketamine and 10 mg/kg xylazine. After injection the animals were perfused with 9% sucrose followed by 4% paraformaldehyde. Fixed tissues were stored in 25% sucrose, frozen, cryo-sectioned and the 32 μm sections placed on Histobond slides (VWR international, Radnor, PA). The slides were mounted with Fluoromount-G mounting medium containing Hoechst 33342 stain (Electron Microscopy Sciences, Hatfield, PA). The fluorescent signal was imaged using a Nikon fluorescent microscope, NIS-Elements imaging software and a Photometrics CoolSnap K4 CCD camera (Roper Scientific, Inc, Duluth, GA). Animals without correct placement of the optical fiber or electrode were eliminated. In the experiments greater than 80% of the animals had correct placement.
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8

Paraffin Embedding and Tissue Sectioning

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Tissue samples were fixed overnight in 4% PFA at 4 °C with constant agitation before dehydration through a series of graded ethanol washes (PBS, 25%, 50%, 70%, 95%, 100%), cleared in xylenes, and embedded in paraffin. Samples were serially sectioned using a Leica RM2235 microtome, at 0.5 μm thickness, and mounted on charged Histobond slides (VWR, Radnor, PA). Slides were then cleared in xylenes to remove excess wax, briefly rehydrated through graded ethanol washes (100%, 80%, 70%, 50% and 25%), and rinsed in distilled H2O before staining. Methods for each staining procedure can be found below. Following histological staining, all slides were rinsed in diH2O, dehydrated, cleared in xylenes, and affixed with Permount (Fisher Scientific, SP15-100, Hampton, NH). Images were captured using an Olympus BX50 microscope.
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9

Histological Analysis of Femur Osteolysis

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Femurs were fixed in 10% neutral–buffered formalin and then decalcified using Decal bone decalcifier (StatLab, McKinny, TX) for 24 h. Samples were then rinsed thoroughly and dehydrated through a series of 95% and 100% ethanol and xylene washes and embedded in paraffin blocks, and cut into 5 μm sections. Sections were then placed on histobond slides (VWR, Radnor, PA), deparaffinized, rehydrated, and stained with hematoxylin (VWR) and eosin-Y (Thermo Fisher Scientific). Coverslips were mounted with toluene–based mounting media and dried flat. Images were taken using Zen 2012 Blue Edition. Qualitative analysis of histological slices was used to confirm osteolysis and pathological fracture.
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10

Histological Analysis of Gastrocnemius Muscle

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Whole gastrocnemius muscles were removed from operated and contralateral legs and fixed in 4% paraformaldehyde, dehydrated, and embedded in paraffin. Muscles were cross-sectioned approximately 0.5 cm from the margins. Sections (5 μm) were placed on Histobond slides (VWR, Radnor, PA, USA), deparaffinized and rehydrated, and stained with Harris’ haematoxylin (VWR) and eosin-Y (Thermo Scientific, Waltham, MA, USA) (H&E). Sections were also stained with Masson’s trichrome using Weighert’s haematoxylin (Sigma-Aldrich, St. Louis, MO, USA), Biebrich’s scarlet-acid fuschin (Sigma-Aldrich), and aniline blue (Sigma-Aldrich). Coverslips were mounted with xylene-based mounting media and allowed to dry flat before imaging.
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