The largest database of trusted experimental protocols

224 protocols using szx16 stereomicroscope

1

Visualizing Yeast Colony Morphology

Check if the same lab product or an alternative is used in the 5 most similar protocols
For observing colony morphology, colonies were imaged using SZX-16 stereo microscope (Olympus) wherein the light source was above the colony. Bright-field imaging of 7 day old colonies were done using SZX-16 stereo microscope (Olympus) wherein the light source was below the colony. Epifluorescence microscopy imaging of 7 day old gluconeogenesis reporter colonies (pPCK1-mCherry), pentose phosphate pathway (PPP) reporter colonies (pTKL1-mCherry) and HXK1 reporter colonies (pHXK1-mCherry) were imaged using the red filter (excitation of 587 nm, emission of 610 nm) of SZX-16 stereo microscope (Olympus). Similar protocol was followed for imaging 1 day to 6 day old colonies.
+ Open protocol
+ Expand
2

Imaging Colony Morphology and Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
For observing colony morphology, colonies were imaged using SZX-16 stereo microscope (Olympus) wherein the light source was above the colony. Bright-field imaging of 7 day old colonies were done using SZX-16 stereo microscope (Olympus) wherein the light source was below the colony. Epifluorescence microscopy imaging of 7 day old gluconeogenesis reporter colonies (pPCK1-mCherry), pentose phosphate pathway (PPP) reporter colonies (pTKL1-mCherry) and HXK1 reporter colonies (pHXK1-mCherry) were imaged using the red filter (excitation of 587 nm, emission of 610 nm) of SZX-16 stereo microscope (Olympus).
+ Open protocol
+ Expand
3

Visualizing Cellular Phenotypes with Fluorescence

Check if the same lab product or an alternative is used in the 5 most similar protocols
For observing colony morphology, colonies were imaged using SZX-16 stereo microscope (Olympus) wherein the light source was above the colony. Bright-field imaging of 7-day old colonies were done using SZX-16 stereo microscope (Olympus) wherein the light source was below the colony.
Epifluorescence microscopy imaging of 7-day old gluconeogenesis reporter colonies (pPCK1-mCherry), pentose phosphate pathway (PPP) reporter colonies (pTKL1-mCherry) and HXK1 reporter colonies (pHXK1-mCherry) were imaged using the red filter (excitation of 587 nm, emission of 610 nm) of SZX-16 stereo microscope (Olympus).
+ Open protocol
+ Expand
4

Alkaline Phosphatase and Calcium Deposition Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
At a predetermined time point, gels were fixed in formalin 10% buffered in phosphate for 20 min, washed with PBS, and incubated in a solution consisting of NBT and BCIP stock solutions in ALP buffer (100 mM Tris, 50 mM MgCl2, 100 mM NaCl, pH 8.5) for 2 h. The stained samples were observed with the Olympus SZX16 Stereomicroscope (Olympus, Tokyo, Japan). ALP expression appeared in blue.
Gels were fixed in formalin 10% buffered in phosphate for 20 min, washed with PBS, and incubated in 2% Alizarin red S solution for 5 min. Then, the gels were washed with PBS under gentle shaking for 16 h, and the PBS was changed at least three times. The stained samples were then observed with the Olympus SZX16 Stereomicroscope. Calcium deposition exhibited in red.
+ Open protocol
+ Expand
5

Quantitative Analysis of Stem Cell Osteogenesis

Check if the same lab product or an alternative is used in the 5 most similar protocols
At a preset time-point, gels were fixed in 10% formalin for 20 min, washed with PBS, and incubated in an NBT and BCIP solution in the ALP buffer for 2 h. The images of stained samples were taken on an Olympus SZX16 Stereomicroscope (Olympus, Tokyo, Japan). ALP expression was stained blue. For ALP activity assay, gels were washed with PBS, incubated in 0.1% Tween 20 buffered in PBS at 4 °C for 5 min. ALP activity was quantified with the Alkaline phosphatase colorimetric assay and read at 405 nm, which was normalized to total DNA contents measured with the picogreen assay (Thermo Scientific, Rockford, IL).
Gels were fixed in 10% formalin for 20 min, washed with PBS, and incubated in 2% Alizarin red S solution for 5 min. Then, the gels were washed for 16 h in PBS (refreshed three times) to remove excess staining agent. The images of stained samples were captured on the Olympus SZX16 Stereomicroscope. Calcium deposition was stained red. The semiquantification of alizarin red staining was performed with calcium extraction in acetic acid and ammonium hydroxide neutralization, followed by colorimetric reading at 405 nm.[30 (link)]
+ Open protocol
+ Expand
6

Measuring Root Hair Growth Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
For the root length measurements, seeds of different genotypes were germinated for 4 days on 1/2 MS and then RHs approximately 0.6-0.8 mm from the root tip were measured with an Olympus SZX16 stereomicroscope. RH length was measured from the digital images using ImageJ software 1.52e. Measurements for at least eight seedlings (n = 8, 80-200 RHs) of each genotype were recorded. For RALF1 treatments, 2-day-old vertically grown A. thaliana seedlings were carefully transferred to filter papers that were soaked with 1/2 MS liquid culture medium containing different RALF1 and CHX concentration combinations. We performed CHX treatment for a shorter time twice (4 h/day) within 2 days to block protein synthesis, and we obtained similar results. The seedlings were incubated for 2 d followed by RH measurements and statistical analysis. RH growth rate was imaged by capturing time-lapse images at 5 min intervals with an Olympus SZX16 stereomicroscope. Images were collected for a total of 1 h, and root lengths were measured using ImageJ software to determine the growth rate. The RALF1mediated primary root growth inhibition was analyzed as previously described (Haruta et al., 2014) .
+ Open protocol
+ Expand
7

Elutriation of Synchronized Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Elutriation was performed in an Avanti J-26S XP elutriator equipped with a JE 5.0 rotor and a standard 40 ml large elutriation chamber (Beckman Coulter Inc., California, United States). A variable-speed pump (BT100-1L equipped with a YZII15 pump head, Baoding Longer Peristaltic Pump Co., Ltd., Hebei, China), a bubble trap, a manometer for monitoring back pressure in the rotor, and tubing with three-way valves were employed to route the cell suspension into the chamber (Figure 1).
The optimized protocol for counter-flow centrifugal elutriation of synchronize cells is shown in Supplementary Table 1. Cell integrity was monitored by light microscopy (Olympus SZX16 stereomicroscope, Olympus Co., Japan) at 100 × magnification. Fractions were collected from the elutriation system and nuclei were extracted immediately and stored at −20°C for flow cytometry analysis.
+ Open protocol
+ Expand
8

Phryna ortegioides-like Specimens from Malatya

Check if the same lab product or an alternative is used in the 5 most similar protocols
Some interesting specimens belonging to the genus Phryna, in which their main distribution area is the Irano–Turanian phytogeographical region, were collected from Malatya province. As a result of examining the literature (Barkoudah 1962 , Huber-Morath 1967 ) and herbarium specimens, it was found that the collected specimens resemble Phrynaortegioides but differ from this species in terms of calyx length, calyx teeth length, petal colour, petal calyx ratio and capsule calyx ratio. Flower, petal and capsule pictures were taken with an OLYMPUS SZX-16 Stereomicroscope, DP 72 digital camera and seed surface images were taken by a Quanta Feg 450 scanning electron microscope (SEM) at Bozok University Research and Application Centre. The vegetative parts were measured with a ruler with 0.5 mm accuracy and the floral characteristics were studied using an ocular micrometer.
+ Open protocol
+ Expand
9

Fungal Growth and Morphological Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Isolates on PDA plates were incubated at 25 °C for 30 days under near-ultraviolet (UV) light (12 h light/12 h dark). The growth rate of mycelium was measured in five duplicates. Colony color on PDA, Corn meal agar (CMA), and Oatmeal agar (OMA) media incubated at 25 °C near UV light with 12 h, was investigated according to the method of Rayner [84 ]. The morphology imagines were taken using Canon 600D digital camera (Canon Inc., Tokyo, Japan) after 10 days of incubation. Conidiomata and conidia were observed under the OLYMPUS SZX16 stereomicroscope (Olympus Corporation, Tokyo, Japan), conidial length/wide ratio of 30 conidia was measured with a stage micrometer under a Motic BA200 light microscope (Motic China Group Co., Ltd., Nanjing, China). Alpha and beta conidia were measured for calculating means ( x¯ ) and standard deviations (SD). The conidia ranges were shown as (min−) x¯ − SD − x¯ + SD (−max) μm ( x¯ ± SD). Conidia digital images were captured using Nikon Eclipse 80i compound light microscope imaging system (Nikon Corporation, Tokyo, Japan).
+ Open protocol
+ Expand
10

Zebrafish Angiogenesis Inhibition Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tg (vegfr2:GFP) zebrafish embryos 24 h post-fertilization were treated with 1 mg/mL pronase E solution to remove the egg membrane. Then, they were randomly divided into 4 groups, namely the normal control group, the model group (vatalanib, PTK787), the positive control group (Danhong injection), and the experimental group. Each group had 10 zebrafish embryos, and each group had two parallel repeats.
As shown in Figure 8A, the model group was built successfully based on significant inhibition of the growth of intersegmental blood vessels (ISVs) by treating zebrafish embryos with vatalanib (PTK787). Then, the positive control group and experimental group were also treated with vatalanib PTK787 (0.2 μg/mL) to afford model zebrafish whose intersegmental blood vessels (ISVs) were significantly inhibited. Simultaneously, the positive control group was given a Danhong injection (10 μL/mL) and the experimental group was given various concentrations of tested compounds (20 μM, 40 μM, 80 μM).
After incubation at 28 °C for 24 h, the intersegmental blood vessels (ISVs) of zebrafish were observed and visualized under a fluorescence microscope (SZX16 stereo microscope and DP2-BSW image acquisition system, Olympus, Japan), and the ISV index was calculated as follows: ISV index = number of intact vessels × 1 + number of defective vessels × 0.5 [12 (link)].
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!