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68 protocols using lcms 8030

1

PFAS Analysis in Plant and River Water

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The analysis of PFASs (i.e., PFOA, PFOS, and PFBS) in plant and river water samples was conducted using a liquid chromatograph (LC) coupled with triple quadrupole linear ion trap tandem mass spectrometer (Shimadzu LCMS-8030, Canby, OR, USA) equipped with an electrospray ionization (ESI) source, which was in a negative ion mode. The targeted PFASs were quantified using multiple reaction monitoring (MRM) mode of analysis. The chromatographic separation of analytes was achieved with a Luna® Omega Polar C18 column (2.1 × 100 mm, 3.0 µm, Phenomenex, Aschaffenburg, Germany). The column temperature was set at 40 °C. A gradient elution program was applied and was made of 20 mM ammonium acetate (solvent A) and 100% MeOH (solvent B), at a flow rate of 0.3 mL/min and an injection volume of 10 µL used for individual samples. The linear gradient elution program started at 20% B and increased to 80% B after 5 min, then increased to 95% B for 15 min; it was kept to 100% B for 17–27 min, before being 20% B for 30–40 min. The total run time for each injection was 40 min. Argon gas was used as the collision gas. The LC system was a LCMS-8030 Shimadzu system with a DGU-20A3R degassing unit, coupled with an LC-20AD liquid chromatograph, a CTO-20AC column oven, a SIL-20AC autosampler and a NM32LA nitrogen gas generator.
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2

sPAH Metabolic Profiling in Mice Liver

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A 10 µL aliquot of the sPAH stock solution (10 mM in DMSO) was diluted in 990 µL of a mixture of acetonitrile and water. This solution was then diluted 100-fold in phosphate buffer containing mice liver microsomes (0.5 mg/mL), 1 mM NADPH, and 3 mM MgCl2, and incubated at 37 °C. After 2, 10, 20, 40, and 60 min, 70 µL aliquots were collected and mixed with 70 µL acetonitrile at 0 °C. Equivalent experiments were performed without NADPH in order to identify chemical instability or enzymatic process not depending on NADPH, and with testosterone as a positive control. The enzymatic reaction was stopped by addition of acetonitrile. Samples were analyzed by LC–MS/MS on an UHPLC LC–MS 8030 (Shimazu, Kyoto, Japan).
For metabolite identification, 50 µM of sPAH were incubated with mice liver microsomes and NADPH. Two samples were prepared: one in which acetonitrile was added immediately (t0) and one in which acetonitrile was added after 30 min. After centrifugation for 5 min at 15,000× g, 2 samples of each supernatant were analyzed by LC–MS/MS on a LC–MS 8030 (Shimazu, Kyoto, Japan) and detected by selected ion monitoring (SIM).
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3

LCMS-Based Metabolite Separation

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We used LCMS-8030 (Shimazu, Japan). A Sim-pack XR-ODSIII 2.2 μm C18 150 mm × 2.0 mm HPLC column (Shimazu, Japan) was used for HPLC separation. The column was kept at 40 °C. Mobile phase A was 0.1% formic acid in water, and mobile phase B was acetonitrile. LC gradient was as follows: 45%B → 75%B (15 min) → 75%B (15 min) → 45%B (15 min) → 45%B (10 min). The flow rate was 0.2 mL/min. A typical injection volume was 18 μL using partial loop injection mode.
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4

Quantification of Thiol-Containing Biomolecules

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Samples derivatized with monobromobimane (mBB) (Life Technologies) were analyzed by the triple-quadrupole mass spectrometer coupled to HPLC (Shimazu LCMS-8030). Samples were subjected to a reverse phase Symmetry C18 HPLC column (2.1 × 150 mm, Waters) at the flow rate of 0.8 ml/min. The mobile phase consisted of (A) 0.25% formic acid in water and (B) 0.25% formic acid: methanol = 1:1. Samples were separated by eluting with a gradient: 40% B at 0 min, and 80% B at 8 min and remained it for 10 min. The column oven was maintained at 35 °C. The effluent was subjected to the mass spectrometer using an electrospray ionization (ESI) interface operating in the negative- or positive-ion mode. The source temperature was set at 400 °C, and the ion spray voltage was at 4.5 kV. Nitrogen was used as a nebulizer and drying gas. The tandem mass spectrometer was tuned in the multiple reaction monitoring mode to monitor mass transitions m/z Q1/Q3 413.45/191.00 (mBB-S-mBB), 447.55/192.00 (mBB-S2-mBB), 477.60/191.00 (mBB-S3-mBB), 509.65/191.00 (mBB-S4-mBB), 543.75/192.00 (mBB-S5-mBB).
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5

Alkylresorcinols quantification in plasma

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Alkylresorcinols (AR) are phenolic lipids that reflect whole-grain wheat and rye intake when measured in blood plasma. EDTA plasma total and homologue ratios of AR were measured using a recently published normal-phase liquid chromatography-tandem mass spectrometry (LC-MS/MS) method [34] . Briefly, 100 µL of plasma was extracted using supported liquid extraction (HybridSPE®, Supelco, Sigma Aldrich) with 2 x 800 µL acetone. The resulting extract was evaporated and resuspended in heptane:ethanol solution (95:5v/v). Extracts were run on an LC-MS/MS (LCMS 8030+, Shimadzu Europa GmbH, Duisberg, Germany) and odd and even AR homologues from C17-C26 were measured using multiple reaction monitoring. Intra-batch variation for control samples was 3-15 % while inter-batch variation was 8-18 %, with variation highest around the limit of detection.
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6

Analytical Methods for Organic Synthesis

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Tetrahydrofuran (THF) and N,N-dimethylformamide (DMF) were dried over activated molecular sieves 4 Å. Other solvents and reagents were of analytical grade and were used as received without further purification. NMR spectra were recorded on Bruker Avance III 300 MHz, 400 MHz, and 700 MHz spectrometers. Chemical shifts are reported as δ values in parts per million relative to the residual solvent signal (CDCl3: δ = 7.24 ppm for 1H and 77.23 ppm for 13C; CD3OD: δ = 3.31 ppm for 1H and 49.15 ppm for 13C). Coupling constants are in hertz (Hz). The following abbreviations are used for spin multiplicity: s = singlet, d = doublet, t = triplet, q = quartet, m = multiplet, and br = broad. HPLC-ESI MS analyses were performed on a triple quadrupole Shimadzu LCMS 8030. Infrared spectra were recorded on a PerkinElmer UATR two instrument and are reported in cm−1. Melting points were determined in open glass capillaries and are uncorrected. Silica Gel 60, Merck 230–400, was used for preparative column chromatography. Sigma-Aldrich TLC plates (silica gel on Al foil with fluorescent indicator 254 nm) were used for analytical TLC. UV lamp (λ = 254 nm) and solution of phosphomolybdic acid in ethanol were used for the visualization of TLC plates.
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7

Sphingolipidomic Analysis of Tissues

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Total lipid for sphingolipidomics was prepared from lyophilized tissues (5–10 mg dry weight) using a methanol/butanol‐based extraction coupled with weak alkaline hydrolysis and HCl treatment to remove glycerolipids and polysaccharides, respectively, according to the previous report (Ishikawa et al. 2018). Each sphingolipid species was quantified using LC‐MS/MS (LCMS‐8030, Shimadzu, Kyoto, Japan) with the MRM mode targeting glucosylceramides, free ceramides, and GIPCs with 0, 1, and 2 hexoses on GlcA‐IPCs. The contents of Hex‐GIPCs and ceramides were absolutely quantified by an internal standard‐based calculation method, and GlcA‐IPCs and Hex‐Hex‐GIPCs (for which we lack standards) were relatively quantified using the calculation factors as for Hex‐GIPCs as previously described (Fang et al. 2016; Ishikawa et al. 2016).
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8

Analytical Characterization of Compounds

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All the reagents were obtained from commercial suppliers and used as received unless otherwise noted. 1H and 13C NMR spectra were recorded on a Bruker AVANCE III HD 400 spectrometer (Bruker, Switzerland, German). Mass spectra were acquired with a Shimadzu LCMS-8030 (Shimadzu, Tokyo, Japan). The model number of the fluorescence spectrophotometer is RF-6000 (Shimadzu, Tokyo, Japan).
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9

Ultrafast Quantitative Analysis by LC-MS/MS

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The analysis was performed using a triple-quadrupole tandem mass spectrometer (LCMS-8030, Shimadzu, Kyoto, Japan) with ultrafast polarity switching and ultrafast multiple reaction monitoring (MRM) transitions. Nebulizing gas (obtained from pressurized air in an N2 LC–MS pump) and nitrogen were dried, working at a flow rate of 3 L/min and 15 L/min, respectively. The desolvation line temperature and the heat block temperature were 250 °C and 400 °C, respectively. Argon 99% (Linde, Wroclaw, Poland) was used as a collision-induced dissociation gas (CID) at a pressure of 230 kPa. A dwell time of 10 ms was selected. To process the quantitative data, LabSolution Ver. 5.6 (Shimadzu, Kyoto, Japan) software was used.
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10

Quantification and Identification of BTZ

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The BTZ concentration was determined using a high performance liquid chromatography (HPLC, Perkin Elmer) equipped with a UV detector at λ max = 256 nm. The mobile phase consisted of methanol to ultrapure water ratio of 1:1 at the flow rate of 1 mL min -1 while the column used was a reverse phase HPLC column (Hypersil Gold). The TOC measurement was conducted by using a TOC analyzer (Shimadzu TOC analyzer).
The PS/PMS concentration was determined by using the spectrophotometric method at λ max = 352 nm as described by Oh et al. [17] . The Cu concentration was determined by using an inductively-coupled plasma-optical emission spectrometer (ICP-OES, Perkin Elmer Optima 2000DV).
The BTZ degradation products after degradation were identified using a Shimadzu LC-MS 8030 equipped with electrospray ionization (ESI) source in positive and negative modes. The N 2 gas was used as the nebulizing and drying gas at the flow rates of 3 and 15 L min -1 , respectively. The samples were injection via a flow injection analysis method and the injection volume was 10 µL at the flow rate of 0.2 mL min -1 . The mobile phase used was 1:1 ratio of methanol and ultrapure water, both with 0.1% v/v of formic acid. The heat block and DL temperatures were 400 and 250 °C, respectively. The m/z was scanned from 50-400.
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