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8 protocols using anti lamin b m 20

1

Protein Interaction Analysis Techniques

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λ-Phosphatase treatment,19 (link) GST pull down,19 (link) far western,19 (link) protein extracts preparation,12 (link) immunoprecipitation,12 (link) immunoblotting assays12 (link) and biotinylation assay12 (link), 62 (link) were performed as previously described. Immunoblot analysis was performed using the following antibodies: anti-Flag (Sigma, Cat#F3165), anti-Flag-HRP (Sigma; Cat#A8592), anti-MPM2 (05-368, Millipore), anti-Notch1Val1744 (Cell Signaling, Danvers, MA, USA, Cat#2421), anti-Notch3 (Cell Signaling; Cat#2889); anti-Notch3 M20 (Santa Cruz Biotechnology, Dallas, TX, USA, Cat# sc-7424), anti-Pin1 (Santa Cruz Biotechnology; Cat#sc-46660), anti-β-actin (Santa Cruz Biotechnology; Cat#sc-47778), anti-Lck (Santa Cruz Biotechnology; Cat#sc-433), anti-α-tubulin (Santa Cruz Biotechnology; Cat#sc-803), anti-LaminB M20 (Santa Cruz Biotechnology; Cat#sc-6217) and anti-Hes1 (Santa Cruz Biotechnology; Cat#sc-25392). The antibody against the activated Notch3-IC protein (N3IC-act) was kindly provided by Genentech (South San Francisco, CA, USA). The anti-N3EC (5E1) antibody was kindly provided by Professor A Joutel.62 (link) The anti-pTα antibody was kindly provided by H von Bohemer.63 (link)
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2

Western Blot Analysis of GATA Factors

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The whole lysates were prepared as previously described (ref). The samples were resolved by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis, and the Western blot analyses were performed as described previously [47 (link)] using anti-GATA1 (N6; Santa Cruz, Dallas, TX, USA), anti-GATA2 (H-116; Santa Cruz), anti-MCP6 (sc-32474; Santa Cruz), anti-MITF (H-50; Santa Cruz), and anti-lamin B (M-20; Santa Cruz) antibodies.
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3

Notch and EGFR Signaling Analysis

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Protein extract preparation62 (link), immunoprecipitation assay63 (link), immunoblotting assays64 (link), and sucrose gradient for rafts isolation45 (link) were performed as described elsewhere. Primary antibodies were as follows: anti-Notch3 (Catalog number 2889), anti-Notch1 (Catalog number 2421), anti-activated Notch1 (N1Val1744), anti-EGFR D38B1 (Catalog number 4267S), anti-phospho-EGFR Y1173 (53A5-Catalog number 4407S), and anti-phospho-EGFR Y1068 (Catalog number 2234S), all from Cell Signaling (Danvers, MA, USA); anti-α-tubulin (Catalog number sc-8035), anti-Lamin B M20 (Catalog number sc-6217), anti-p27 C19 (Catalog number sc-528), anti-cyclin D1 M20 (Catalog number sc-718), anti-cyclin D3 C16 (Catalog number sc-182), anti-Notch1 L18 (N1EC) (Catalog number sc-23299), anti-transferrin H65 (Catalog number sc-21011), and anti-PTPH1 (Catalog number sc-515181), all from Santa Cruz Biotechnology; anti-β-actin (Catalog number A5441) and anti-cholera toxin B subunit peroxidase conjugate (GM1, Catalog number C3741) from Sigma-Aldrich; and anti-Notch3 5E1 (N3EC) antibody was kindly provided by Professor A Joutel65 .
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4

Immunoblotting and Rac1 Activation Assay

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Cell cytoplasmic and nuclear extracts were obtained by using NE-PER nuclear and cytoplasmic extraction reagents according to the manufacturer’s protocols (ThermoFisher). Immunoblotting was performed as previously described (8 (link)). The blots were probed with anti-IRF7 antibody (EPR4718; abcam), anti-Lamin-B (M-20; Santa Cruz Biotechnology), anti-IKKα (Cell Signaling), anti-AKT (Cell Signaling), anti-Osteopontin (Abcam), anti-p65 (C-20; Santa Cruz Biotechnology), anti-P50 (Santa Cruz Biotechnology), anti-STAT1 (Cell Signaling), anti-IRAK-M (ProSci), and anti-Blimp-1 (Abcam). The activation of IRF7, IKKα/β, AKT, and STAT1 were detected by phospho-specific antibodies against pIRF7 (Ser471/472; D6M2I; Cell Signaling), pIKKα/β (Ser176/180; 16A6; Cell Signaling), pAKT (Ser473; D9E; Cell Signaling), and pSTAT1 (Tyr701; 58D6; Cell Signaling). Representative blots from at least two independent experiments were shown.
Rac1 activation was detected by Rac1 activation assay kit (Abcam). Briefly, the total cell lysates were harvested from stimulated FLpDCs and incubated with PAK1 PBD beads at 4°C for 1 h. Rac1-GTP precipitate and the total lysate controls were analyzed by western blot analysis. Rac1 was detected by a specific mouse monoclonal antibody.
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5

Western Blot Analysis of Nrf2 and Keap1

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Cells were harvested at indicated time points and lysed in RIPA buffer (Sigma). Western blot analysis was performed with the use of conventional protocols as described previously [22 (link)]. Nuclear and cytoplasmic proteins were extracted in accordance with the manufacturer's instructions (Pierce Biotechnology). The antibodies and dilutions used included anti-β-actin (AC-15; 1:2000; Sigma), anti-Keap1 (D1G10; 1:1000; Cell Signaling Technology), anti-Nrf2 (D1Z9C; 1:1000; Cell Signaling Technology), anti-LaminB (M-20; 1:1000; Santa Cruz), anti-GFP (A00185.01; 1:1000; Santa Cruz). After extensively washed, the membranes were incubated with anti-mouse or anti-rabbit IgG-horseradish peroxidase conjugate antibody (Zhongshan Company) for 1 h at room temperature and developed with a Luminol chemiluminescence detection kit (Santa Cruz). Membranes were reprobed for β-actin antibodies for normalization and accurate quantification. Protein expression level was quantified by using a Gel EDAS 293 analysis system (Cold Spring USA Corporation) and Gel-Pro Analyzer 3.1 software (Media Cybernetics).
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6

Antibody Characterization for Murine T-cell Studies

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mAbs specific for mouse CD3 (clone 145-2C11), CD28 (clone 37.51), or CTLA-4 (clone UC10-4B9) were purchased from Biolegend, as were flourophore-conjugated anti-CD4 (Clone GK1.5), -CD8 (53-6.7), -Foxp3 (clone FJK-16s), -CD25 (Clone PC61), -CD44 (Clone IM7) and –GITR (Clone DTA-1) mAbs. Anti-human CD3 mAb (OKT3) was purified in-house. Polyclonal anti-PKC-θ (sc-212), anti-PKC-η (C-15 and sc-215), anti-PAK (N-20 and sc-882), anti-NFATc1 (7A6), anti-lamin B (M-20), and anti-α-tubulin (TU-02) Abs were obtained from Santa Cruz Biotechnology. Anti-p65 (NF-κB), anti-GIT2 and -αPIX Abs were obtained from Cell Signaling Technology. Anti-Foxp3 Abs (clone 150D/E4 for immunoblotting and clone FJK-16s for flow cytometry) were purchased from eBiosciences. Alexa-647-conjugated anti-mouse Ig and Alexa-555-conjugated anti-rabbit Ig were obtained from Molecular Probes. Digitonin was obtained from EMD Chemicals. Calf intestinal alkaline phosphatase was purchased from New England Biolabs. Recombinant CD86-Fc was previously described46 (link).
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7

Osteoclastogenesis Signaling Pathway Analysis

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Recombinant human RANKL and M-CSF were obtained from PeproTech (Cranbury, NJ, USA). Recombinant human/mouse/rat BMP-2 (355-BM) was purchased from R&D Systems (Minneapolis, MN, USA). Anti-mouse MerTK antibody (AF591) was from R&D Systems. Anti-Samd1 (9743), phospho-Smad1/5/8 (9511), β-catenin (9562), GSK3β (12456), phospho-GSK3β (5558, Ser 9), and NF-κB (8242) antibodies were from Cell Signaling Technology (Danvers, MA, USA). Anti-NFATc1 antibody (7A6) was purchased from BD Biosciences Pharmingen (San Diego, CA, USA). Anti-Lamin B (M-20) was obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Anti-Osteocalcin antibody (ALX-210-333) was from Enzo Lifesciences (Farmingdale, NY, USA). Antibody against Osteoprotegerin (A2100) was purchased from ABclonal (Woburn, MA, USA). Anti-β-actin was obtained from Sigma-Aldrich (St. Louis, MO, USA). All other reagents were purchased from Sigma-Aldrich unless otherwise specified.
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8

Antibody Characterization for Murine T-cell Studies

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mAbs specific for mouse CD3 (clone 145-2C11), CD28 (clone 37.51), or CTLA-4 (clone UC10-4B9) were purchased from Biolegend, as were flourophore-conjugated anti-CD4 (Clone GK1.5), -CD8 (53-6.7), -Foxp3 (clone FJK-16s), -CD25 (Clone PC61), -CD44 (Clone IM7) and –GITR (Clone DTA-1) mAbs. Anti-human CD3 mAb (OKT3) was purified in-house. Polyclonal anti-PKC-θ (sc-212), anti-PKC-η (C-15 and sc-215), anti-PAK (N-20 and sc-882), anti-NFATc1 (7A6), anti-lamin B (M-20), and anti-α-tubulin (TU-02) Abs were obtained from Santa Cruz Biotechnology. Anti-p65 (NF-κB), anti-GIT2 and -αPIX Abs were obtained from Cell Signaling Technology. Anti-Foxp3 Abs (clone 150D/E4 for immunoblotting and clone FJK-16s for flow cytometry) were purchased from eBiosciences. Alexa-647-conjugated anti-mouse Ig and Alexa-555-conjugated anti-rabbit Ig were obtained from Molecular Probes. Digitonin was obtained from EMD Chemicals. Calf intestinal alkaline phosphatase was purchased from New England Biolabs. Recombinant CD86-Fc was previously described46 (link).
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