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20 protocols using phospho smad3

1

Inflammatory Cytokine Regulation Analysis

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Lipopolysaccharide was purchased from Sigma-Aldrich (St Louis, Ca). Recombinant mouse IL-4, recombinant mouse IL-6, recombinant mouse IL-1β, recombinant mouse TNF-α, recombinant mouse IL-10, and recombinant mouse TGF-β were purchased from R&D Systems (Minneapolis, MN). Tocilizumab, LY2109761, R-7050, Stattic, Bay 11-7082, and SIS3HCl were purchased from Selleck (Huston, USA). IL-1 receptor antagonist (IL1Ra) was purchased from Make Research Easy (Nanjing, China). Monoclonal mouse anti-β-actin (TA-09) was purchased from Zhongshan Golden Bridge Biotechnology (Beijing, China). Antibodies against OT, OTR, β-tubulin, CD206, F4-80, phospho-STAT3, STAT3, phospho-SMAD2, SMAD2, phospho-SMAD3, SMAD3, p65, and phospho-p65 were purchased from Abcam (Cambridge, UK) and Cell Signaling Technology (Danvers, MA). Secondary antibodies were purchased from Invitrogen Life Technology (Foster City, CA). Mouse ELISA kits were obtained from R&D Systems and CUSABIO (Wuhan, China). All reagents were analytical grade.
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2

Diabetic Nephropathy Molecular Mechanisms

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Nicotinamide (Nanjing Yasnt Bio-Tech Co. Ltd.—Nanjing, China), streptozotocin (STZ; Sigma Aldrich, Missouri, United States), gliclazide (Servier Laboratories Limited, France), alpha-lipoic acid (ALA; Nanjing Yasnt Bio-Tech Co. Ltd.—Nanjing, China), ramipril (Teva Pharmaceuticals, United Kingdom). TGF-β1 primary antibody (cat. no. SC7892, Santa Cruz Biotechnology, Inc.), phospho-Smad2 (cat. no. ab53100, Abcam, Canada), phospho-Smad3 (cat. no. ab52903, Abcam), β-actin (cat. no. ab8227, Abcam, Canada), horseradish peroxidase (HRP)-conjugated secondary antibodies (cat. no. ab13168, Abcam; cat. nos. sc-2350 and sc-2371, Santa Cruz Biotechnology, Inc.).
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3

Immunofluorescence Analysis of IL-37 and p-Smad3

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HaCaT cells were seeded in 4-well Lab-Tek II Chamber Sliders (Nunc, Rochester, NY) at a density of 5 × 104 cells/well overnight. Thereafter, cells were incubated with PG102 for designated time points, followed by cold phosphate-buffered saline (PBS) wash and fixation with 4% paraformaldehyde. Each slide was blocked in 5% donkey serum and 10% FBS for 1 hour at room temperature. The slides were then incubated with antibodies specific to IL-37 (1 : 200, Thermo Fisher) and phospho-Smad3 (1 : 200, Abcam) overnight at 4°C. This was followed by 1 hour incubation with the respective secondary antibodies and mounted with Vectashield 4′,6-diamidino-2-phenylindole (DAPI) mounting medium. Digital confocal imaging was performed and analyzed using Carl Zeiss (Oberkochen, Germany) LSM 700 confocal microscope and ZEN software.
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4

Immunofluorescence Analysis of Smad3 and Stat3

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Each group of HaCaT cells was washed with PBS followed by fixation with 4% paraformaldehyde (pH 7.4) in 6-well plates. Cells were incubated with 0.5% Triton X-100 for 30 min at room temperature, and treated with 5% BSA for 1 h. Cells were incubated with the following primary antibodies: Smad3 (#9523; dilution, 1:100), phospho-Stat3 (#9145; dilution, 1:100), Stat3 (#12640; dilution, 1:500) (all from Cell Signaling Technology), and phospho-Smad3 (ab52903; dilution, 1:100; Abcam) overnight at 4°C. The cells were incubated with the corresponding fluorescent dye-conjugated secondary antibodies (#4412; dilution, 1:200; Cell Signaling Technology) at 37°C for 1 h, and protected from light. The cells were visualized via fluorescence microscopy.
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5

Western Blot Analysis of SMAD Signaling

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Cells were lysed using protein extraction buffer at 48 h after transfection, and protein concentration was quantitated by BCA protein assay. Lysates (30 µg) were resolved by SDS/PAGE and transferred onto nitrocellulose membrane (Pall corporation, Port Washington, NY, USA). The following antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA): SMAD2 (catalogue no. 5339); phospho‐SMAD2 (catalogue no. 3108); SMAD3 (catalogue no. 9523); p21 (catalogue no. 2947); Santa Cruz Biotechnology (Delaware, CA, USA): SMURF2 (catalogue no. sc‐25511); Na+/K+ ATPase α (catalogue no. sc‐48345), (AbFrontier, Seoul, Korea): anti‐β‐actin (catalogue no. LFPA0207), (Sigma‐Aldrich, St. Louis, MO, USA): anti‐HA (catalogue no. H6908); anti‐Flag (catalogue no. F1804), (Abcam, Cambridge, UK): anti‐TβRI (catalogue no. ab31013); phospho‐SMAD3 (catalogue no. ab52903). Western Blotting Luminol Reagent (Santa Cruz Biotechnology, Santa Cruz, CA, USA) was used to detect protein according to the manufacturer’s instructions. The membranes were visualized with an ATTO image analyzer (ATTO, Tokyo, Japan).
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6

Quantifying TGF-β1 and SMAD Signaling

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Tissue protein extracts were generated using RIPA buffer (150 mM NaCl, 1% IGEPAL, 0.5% sodium deoxycholate, 0.1% SDS, 1 mM EDTA, 10 mM NaF, 50 mM Tris pH 7.4) with protease (cOmplete tablets, EDTA free, Roche) and phosphatase (phosphatase inhibitor cocktail sets I + II, Millipore) inhibitors. Standard Western blotting analysis was performed using 10% SDS-PAGE gels with the following primary antibodies from Cell Signaling: SMAD3 (1:1000, #9523), Phospho-SMAD3 (1:1000, #9520), SMAD2 (1:1000, #5339), Phospho-SMAD2 (1:1000, #3108), ERK1/2 (1:1000, #4695), Phospho-ERK1/2 (1:2000, #4370), p38 (1:1000, #8690), and Phospho-p38 (1:1000, #4511), and the following antibody from Abcam: Total OXPHOS Rodent WB Antibody Cocktail (1:5000, ab110413). Secondary antibody incubations were performed at room temperature for 60 min using HRP-conjugated antibodies (1:10,000) and then imaged using a ChemiDoc system (Bio-Rad).
Quantification of the TGF-β1 content was performed on cardiac tissue and plasma using an ELISA kit by R&D Systems (DB100B) according to the manufacturer's instructions. The total TGF-β1 amounts were measured by first activating the samples (to convert biologically inactive latent TGF-β1 into active TGF-β1) as instructed by the kit protocol, while measurement of the “bioavailable” TGF-β1 content was performed by skipping the initial activation step.
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7

Protein Isolation and Western Blot Analysis

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PT cells were lysed for protein isolation using; 25 mM Tris-HCl pH 8, 1 mM EDTA, 150 mM NaCl, 1% NP-40, 1 mM Na3VO4, and protease inhibitor cocktails (Sigma). The tissue lysis buffer additionally contained 1 mM PMSF, 1 µg/ml aprotinin, 1 µg/ml leupeptin, and 1 µg/ml pepstatin A. Proteins of both tissue and cell lysates were separated by SDS-PAGE and transferred to nitrocellulose membranes. All primary antibodies were dissolved in 5% BSA solution and incubated with membranes overnight at 4 °C. The following primary antibodies were used: Pink1 (Novus), LC3A (CST), Pgc1α (Merck), cleaved caspase 9 (CST), phospho-Smad3 (CST), total OXPHOS (ab110413, Abcam), Polγ (Santa Cruz), Tom20 (Santa Cruz), α-tubulin (GT114, GeneTex), polyclonal goat anti-rabbit-HRP (31460, Pierce), polyclonal goat anti-mouse-HRP (31430, Pierce). Following addition of HRP substrate (NEL113001EA, PerkinElmer), chemiluminescence was recorded with a LAS-400 mini Luminescent Image Analyzer and Image J was used for quantification.
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8

Molecular Signaling Pathway Analysis

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The following antibodies were used: Phospho-S6RP (Cell Signaling, 4858), S6RP (Cell Signaling, 2217), Deptor (Cell Signaling, 11816S), REDD1 (Protein Tech, 10638-1-AP), Vinculin (Sigma, V9131), Phospho-SMAD3 (Cell Signaling, 9520S), SMAD3 (Cell Signaling, 9513), MEF2AC (abcam, ab197070), p62 (03-GP62-C), Androgen Receptor (Millipore, PG-21), Phospho-SMAD3 (abcam, ab52903), Actin (Sigma, A2228), HA (Cell Signaling, 3724S), HA.11 (Biolegend, 901533), GFP (abcam, ab13970), Wheat Germ Agglutinin Alexa Fluor 594 (Thermo Scientific, W11262), Wheat Germ Agglutinin Alexa Fluor 488 (W11261).
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9

Extracellular Matrix Remodeling Signaling

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Antibodies to collagen I (#SC-393573), Smad7(#SC-365846), Twist (#Sc-15393), and GAPDH (#SC-32233) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA). Phospho-histone H3(Ser10) antibody (#05-806) was purchased from Millipore (Billerica, MA). Fibronectin (#ab2413), H3K36me3 (#ab194677), phospho-Smad3 (#63403), and Smad3 (#Ab28379) antibodies were purchased from Abcam, Inc (Cambridge, MA). siRNA specific for rat SYMD2 (#S144314) was purchased from ThermoFisher (Waltham, MA). AZ505 (#1035227-43-0) was purchased from MedChemExpress (Monmouth, NJ). α-SMA (#A2547), vimentin (#V5255). α-Tubulin (#T5168) antibodies and all other chemicals were purchased from Sigma-Aldrich (St. Louis, MO). SMYD2 (#4251) and Phospho-STAT3 (#9145), STAT3 (#12640S), phospho-AKT (#9271S), AKT (#9272S), Snail1 (#3879S), histone H3 (#9715), and other antibodies used in this study were purchased from Cell Signaling Technology (Danvers, MA).
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10

Quantitative Analysis of Protein Expression

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Total cellular protein was extracted in radioimmunoprecipitation assay lysis buffer (1% Nonidet P‐40, 0.1% SDS, 1 mmol/l phenylmethylsulfonyl fluoride, 0.5% sodium deoxycholate, 1 mmol/l sodium orthovanadate and 1 mmol/l sodium fluoride in phosphate‐buffered saline), and the protein concentration was measured using a bicinchoninic acid protein assay kit (Pierce Biotechnology, Rockford, IL, USA). From each sample, 50 µg of protein were subjected to sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes (Millipore, Boston, MA, USA). Membranes were incubated with primary antibodies (rabbit monoclonal antibodies against human α‐SMA, phospho‐Smad3 and TGF‐β1, all obtained from Abcam, Cambridge, UK) at 4 °C overnight and secondary antibodies (goat anti‐rabbit IgG, Abcam) for 1 h at room temperature. The specific protein was detected using an enhanced chemiluminescence system (Amersham, Arlington Heights, IL, USA). β‐Actin was used as the loading control in all cases.
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