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Aprotinin

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Aprotinin is a protease inhibitor that can be used to inhibit serine proteases, such as trypsin, plasmin, and kallikrein. It is commonly used in research applications to prevent proteolytic degradation of proteins.

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11 protocols using aprotinin

1

Neuronal Culture and Characterization

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Dulbecco’s Modified Eagle’s Medium (DMEM) (#11995065), Neurobasal Medium (#21103049), trypsin-EDTA 0.25% (#25200056), penicillin-streptomycin (#15140122), B27 Supplement (#17504944), and Glutamax (#35050061) were from Life Technologies (Carlsbad, CA, USA), Fetal calf serum (FCS) was from Internegocios SA (Mercedes, Argentina). The protease inhibitors, purchased from Santa Cruz Biotechnology (Dallas, TX, USA), were leupeptin hemisulfate (#295358), pepstatin A (#45036), aprotinin (#3595), and phenylmethylsulfonyl fluoride (#329-98-6). Monosialoganglioside GM2 (#1502) was obtained from Matreya (State College, PA, USA). The primary antibodies used were anti-P-PERK (#3179), anti-CHOP (#L63F7) (Cell Signaling Technology, Danvers, MA, USA), anti-CHOP (#MA1-250) (Thermo Fisher, Waltham, MA, USA), anti-MAP-2 (#PCK-554P) (Covance Inc. Princeton, NJ, USA), and anti-MAP-2 (#M2320) (Sigma, St. Louis, MO, USA).
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2

Quantifying Hippocampal BDNF and GDNF in Rats

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Rats receiving unilateral intrahippocampal transplantation of hNSC‐derived EVs or sham surgery were euthanized at 4 weeks after surgery using isoflurane anesthesia. Brains were immediately extracted from the skull (N = 6‐8 per group) and the hippocampus was dissected from each cerebral hemisphere. Each hippocampus was weighed and transferred into 300 μL ice‐cold lysis buffer (N‐PER Neuronal Protein Extraction Reagent, Thermo Scientific Product number 23225) containing sodium orthovanadate (0.5 mM), pheyl‐methylsulfonyl fluoride (PMSF, 1 mM), aprotinin (10 μg/mL), and leupeptin (1 μg/mL; Santa Cruz Biotechnology, Santa Cruz, California, http://www.scbt.com). Tissues were sonicated individually, centrifuged at 4°C and the supernatants were collected and diluted 1:5 with Dulbecco's phosphate‐buffered saline. The supernatants were acidified to pH 2.6 then neutralized to pH 7.6, and the BDNF and GDNF levels were assayed using Emax ImmunoAssay Systems from Promega (BDNF catalog number G7611, GDNF catalog number G7621) and uncoated ELISA plates (Biolegend Nunc MaxiSorp, catalog number 423501). All measurements were performed at a wavelength of 450 μm on a microplate reader (BioTek Synergy Mx).
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3

Fabrication of Fibrin Gels with Embedded Spheroids

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Fibrin gels were prepared as we previously described (Davis, Miller, Case and Leach, 2011 (link), Murphy and Leach, 2012 (link)) by combining 20 mg/mL
fibrinogen (Calbiochem, Gibbstown, NJ), 2.3% (w/v) NaCl (Sigma Aldrich),
2.5 U/mL thrombin (Calbiochem), 20 mM CaCl2 (Sigma Aldrich), and 250
KIU/mL aprotinin (Santa Cruz Biotechnology, Inc., Santa Cruz, CA), all in PBS.
Spheroids containing 15,000 cells/sphere were formed over 48 hours and suspended
in fibrin gels at 2×106 cells/mL of gel
(e.g., 4 spheroids per 30 μL gel), cast into custom
PDMS molds, and allowed to gel for 1 hour (Murphy and Leach, 2012 (link)). An equal number of dissociated cells was
suspended in gels as control groups. Gels were then transferred into individual
wells of 24-well plates and the media was refreshed every 3 days.
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4

Antioxidant and Anti-Inflammatory Assay Protocol

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Carrageenan type IV, Indomethacin, 2-[4-(2-hydroxyethyl) piperazin-1-yl] ethanesulfonic acid (HEPES), Folin-Ciocalteu, trichloroacetic acid (TCA), thiobarbituric acid (TBA), soybean trypsin inhibitor (SBTI), H2O2, tetramethylbenzidine (TMB), Tris-HCl, 2,2-diphenyl-1-picrylhydrazyl (DPPH), potassium ferricyanide, diethylenetriaminepentaacetic acid (DPTA), 5,5-ditiobis 2-nitrobenzoic (DTNB), MgCl2, galic acid, 2,2',2'',2'''-(Ethane-1,2-diyldinitrilo) tetraacetic acid (EDTA), rutin and quercetin were all purchased from Sigma-Aldrich® (St. Louis, MO, USA). Aprotinin, leupeptin, and phenylmethanesulfonyl fluoride (PMSF) from Santa Cruz Biotechnology® (Dallas, Texas, USA). Dimethylsulfoxide from Fluka® (St. Gallen, Switzerland). Ketamine and xilasine from CEVA® (Paulínia, SP, Brazil). The methanol high-performance liquid chromatography (HPLC) grade was purchased from Tedia® Brasil (Rio de Janeiro, RJ, Brazil) and ultrapure water was obtained from Milli® Q apparatus.
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5

Hippocampal BDNF and GDNF Quantification

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Brains were immediately extracted from the skull (N = 4–5/group) and the hippocampus dissected from each cerebral hemisphere. Each hippocampus was weighed and transferred into 300 μL ice‐cold lysis buffer (N‐PER Neuronal Protein Extraction Reagent, Thermo Scientific) containing sodium orthovanadate (0.5 mM), phenyl‐methylsulfonyl fluoride (PMSF, 1 mM), aprotinin (10 μg/mL), and leupeptin (1 μg/mL; Santa Cruz Biotechnology, Santa Cruz, California). Tissues were sonicated individually, centrifuged at 4 °C for 15 min at 13,200 rpm, and the supernatants were collected and diluted 1:5 with Dulbecco's phosphate‐buffered saline. The supernatants were acidified to pH 2.6 then neutralized to pH 7.6 to liberate the neurotrophic factors. Following neutralization, each supernatant was diluted 1:10 prior to loading onto uncoated ELISA plates (Biolegend Nunc MaxiSorp, catalog number 423501) along with their respective BDNF or GDNF standards. The BDNF and GDNF levels were assayed using Emax ImmunoAssay Systems from Promega following the manufacturer’s protocol (BDNF catalog number G7611, GDNF catalog number G7621). Measurements were performed at a wavelength of 450 μm on a microplate reader (BioTek Synergy Mx) and linear regression of the standard curve was used to derive the pg of each neurotrophic factor per gram of hippocampal tissue.
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6

Fabrication of Fibrin Gels with MSCs

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Fibrin gels were formed as we previously described.19 (link),22 (link) This fabrication process resulted in fibrin gels with a final fibrinogen concentration of 20 mg/mL (Calbiochem, Gibbstown, NJ), 1.2–3.9% (w/v) NaCl (Sigma Aldrich, St. Louis, MO), 2.5 U/mL thrombin (Calbiochem), 20 mM CaCl2 (Sigma Aldrich), and 250 KIU/mL aprotinin (Santa Cruz Biotechnology, Santa Cruz, CA), all in PBS. MSCs were added to the fibrinogen pre-gel solution (prior to mixing with thrombin and CaCl2) to achieve a final concentration of 5 × 102 cells/mL in each gel. A total volume of 80 µL was added to each cylindrical PDMS mold (5 mm in diameter), and the contents were allowed to gel for 1 hour in standard culture conditions. The PDMS sheet was then carefully lifted from the culture dish, leaving behind the undisturbed fibrin gels, and the gels were transferred to 12-well tissue culture plates containing media. All gels were cultured in a 1:1 mixture of α-MEM and EBM-2 without osteogenic supplements or growth factors. The day of gel fabrication was denoted as “Day -1”. Gels were maintained in standard cell culture conditions with media changes every 3 days.
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7

Quantifying Inflammatory Mediator Dynamics

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After the shock models in normal control group, LPS group, and treatment group were set for 10 h and 20 h, 2 ml of blood was drawn in the common carotid artery at 2 different stages. Then the blood was evenly mixed with 30 μl of 10% EDTA-Na2 (Guangzhou Land Biotech Corp., China) and 40 μl of aprotinin (Santa Cruz, USA) in the tube and centrifuged at 4°C at 600 g for 10 min to separate the plasma. The plasma was preserved at −80°C. An ELISA kit was used for testing contents of IMD in the plasma in strict accordance with the specifications.
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8

Detailed Lipidomic Analysis of Primary Cells

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Histopaque, p-nitrophenyl valerate (pNPVa), and LPS (E. coli 055:B5) were purchased from Sigma (St. Louis, MO, USA). AIM V® Serum Free Medium was purchased from Thermo-Fisher (Waltham, MA, USA). RIPA lysis buffer and protease inhibitors (phenylmethylsulfonyl fluoride, PMSF; 4-(2-aminoethyl)benzenesulfonyl fluoride, AEBSF; bestatin; pepstatin A; leupeptin hemisulfate; and aprotinin) were from Santa Cruz Biotechnology (Dallas, TX, USA). Antibodies used for Western blots (anti-CES1, anti-MAGL, β-actin, goat anti-rabbit, and goat anti-mouse) were purchased from Abcam (Cambridge, MA, USA). Authentic 2-AG, anandamide, AA, and its deuterated analog AA-d8 were purchased from Cayman Chemical Company (Ann Arbor, MI, USA). Small molecules JZL184 and WWL113 were purchased from Sigma. CpG was purchased from InvivoGen (San Diego, CA, USA). Primary CES1 and MAGL antibodies for flow cytometry were purchased from Abcam. Fluorescence secondary antibodies for flow cytometry and antibodies against IL-6 used to neutralize IL-6 or perform ELISA were purchased from Biolegend (San Diego, CA, USA). For some of the experiments, monocyte-depleted (n = 1) and whole PBMCs (n = 5) were purchased from Astarte Biologics (Bothell, WA, USA).
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9

Hippocampal BDNF Modulation by RZ

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To determine the impact of RZ on the hippocampal BDNF, mice receiving ADR or RZ were euthanized for 4 weeks after the initiation of RZ treatment, and BDNF ELISA was performed as described [34 (link)]. Brains were immediately extracted from the skull (N = 8 to 9 mice per group). The hippocampus was microdissected from each cerebral hemisphere, flash-frozen by immersing the cryo-vials in the liquid nitrogen, and stored at − 80 °C until assayed. Each hippocampus was weighed and transferred into 500 μl ice-cold lysis buffer (NPER, Neuronal Protein Extraction Reagent, ThermoScientific) containing sodium orthovanadate (0.5 mM, Santa Cruz), phenyl-methylsulfonyl fluoride (PMSF, 1 mM, Santa Cruz), aprotinin (10 μg/ml, Santa Cruz), and leupeptin (1 μg/ml; Santa Cruz). Tissues were then sonicated individually and centrifuged at 4 °C, and the supernatants were collected and diluted at 1:5 or 1:10 with ice-cold Dulbecco’s PBS (Gibco). The supernatants were acidified to pH 2.6 and then neutralized to pH 7.6. The BDNF levels were assayed using a commercially available ELISA kit (E-EL-M0203, Elabscience Biotechnology) and uncoated ELISA plates (Nunc MaxiSorp, Biolegend). The colorimetric measurements were performed at 450 nm wavelength using a microplate reader (BioTek SynergyMx).
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10

Fibrin Gel Encapsulation of Spheroids

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Fibrin gels were prepared as we described by combining fibrinogen (5, 12.5, 20 mg/mL; Calbiochem, Gibbstown, NJ, USA), NaCl (1, 2, 3% (w/v); Sigma Aldrich), 2.5 U/mL thrombin (Calbiochem), CaCl2 (0, 20, 40 mM; Sigma Aldrich) and aprotinin (0, 250, 500 KIU/mL; Santa Cruz Biotechnology, Santa Cruz, CA), all in phosphate-buffered saline (PBS). Spheroids were suspended in 80 μL fibrin gels at 5 x 106 cells/mL, cast into custom polydimethylsiloxane molds, and allowed to gel for 1 hr [27 (link), 28 (link)]. After gelation, fibrin gels were transferred into individual wells of 24-well plates, and the medium was refreshed every 3 days.
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