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40 protocols using ab201340

1

Immunohistochemical Analysis of Oxidative Markers

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Immunohistochemical analysis was performed as described elsewhere [10 ]. Antibodies and dilutions used in this study include anti–4-hydroxynonenal (1:150 dilution; cat. # ab48506, Abcam), anti-malondialdehyde (1:300; cat. # ab6463, Abcam), anti-CD68 (1:50; cat. # ab201340; # ab53444, Abcam), and anti-COX2 (1:50; cat. # ab201340, Abcam and 1:50; # sc-1747R, Santa Cruz, USA), antibodies; with the respective secondary antibodies: a cyanine 3–conjugated goat anti-mouse IgG (H+L) cross-adsorbed antibody, (1:500; cat. #M30010 Invitrogen, USA) or a GFP-conjugated AffiniPure goat anti-rabbit IgG (H+L) antibody (1:1000; cat. #111-095-003, Jackson AB, USA) and mouse anti-rabbit IgG-CFL 555: sc-516249, Santa Cruz, USA). The slices were coverslipped with the Fluoro-shield mounting medium containing 4′,6-diamidino-2-phenylindole (DAPI; cat. # F6057, Sigma-Aldrich, USA) and examined under an Axioplan 2 microscope (Zeiss, Germany).
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2

Histological Evaluation of Atherosclerotic Plaques

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To evaluate the distribution of endothelial cells, pericyte cells, PDGFR-β, and macrophages within the AS plaques, slides were blocked in goat serum albumin for 15 minutes. Slides were subsequently incubated with CD31 (ab24590, Abcam), Ng2 (Ab5320, Millipore) PDGFR-β (NB110-60970, Novus) or CD68 (ab201340, Abcam) at 4°C overnight. Sequentially, slides were incubated with secondary antibodies for 1 hour at room temperature. After being washed briefly in PBS, DAPI was applied. Fluorescent images were visualized under a confocal laser-scanning microscope (Leica, Brunswick, Germany).
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3

Analyzing Macrophage Responses to Biomaterials

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To investigate the immune response after injection of various materials such as saline, SP, and SAP-SP, macrophage markers including CD68 (mouse anti-CD68 monoclonal antibody, ab201340, Abcam) and CD206 (goat anti-CD206 polyclonal antibody, sc-34,577, Santa Cruz Biotechnology) were used for immunofluorescence analysis at a 1:100 dilution. Alexa Fluor 488 donkey anti-goat IgG and Alexa Fluor 594 rabbit anti-mouse IgG were used as the secondary antibodies at a 1:1000 dilution. DAPI was used to counterstain nuclei. The macrophage activity of the specimens was examined according to protocols used in a previous study [27 (link)].
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4

Biodistribution of Nanoparticles in Tumor-Bearing Rats

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The subcutaneous Walker-256-bearing rats were administered FITC-tagged bE-NPs or FITC-tagged s-NPs via tail vein injection. In the FITC-tagged bE-NPs group, the blood was taken from rats and the FITC-tagged bE-NPs were prepared as described above. After 12 h postinjection, these rats were anesthetized and perfused with saline and 4% paraformaldehyde. The tumors were harvested and fixed in 4% paraformaldehyde and then dehydrated with sucrose solution for 24 h and embedded in OCT (Sakura, Torrance, CA, USA). The tumors were cut into 5 mm by frozen sectioning and subjected to fluorescence microscope after staining with DAPI (blue) for the distribution of FITC-tagged bE-NPs (green) in tumor. For analyzing the tumor-infiltrated macrophages, sections were incubated with Ribbit monoclonal antibodies recognising CD11b (ab133357, Abcam) and Mouse monoclonal antibodies recognising CD68 (ab201340, Abcam), followed by staining with AlexaFluor 568-conjugated Goat Anti-Ribbit IgG secondary antibody (shown in red) and AlexaFluor 647-conjugated Goat Anti-Mouse IgG secondary antibody (shown in violet). The images were captured by fluorescence microscope and presented as visions on the site with a tumor penetration depth of 2 mm.
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5

IHC Staining of Tissue Samples

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NB tissue samples and mouse tumor samples were fixed and embedded for IHC staining as previously described [45 (link)]. After blockade, the sections were separately incubated with mouse anti-PTBP2 antibody (#sc-376316, Santa Cruz Biotechnology, CA, USA), rabbit anti-PTBP1 antibody (#ab133734, Abcam, Cambridge, MA, USA), rabbit anti-human CCL5 antibody (#12000-1-AP, Proteintech, Chicago, IL, USA), rabbit anti-Ki67 antibody (catalog no.12202, Cell Signaling Technology, Beverly, USA), mouse anti-human CD68 antibody (#ab201340, Abcam), and anti-Twist antibody (#25465-1-AP, Proteintech) at 4°C overnight, hybridized with biotinylated anti-rabbit/mouse immunoglobulin at room temperature for 1 h, and visualized by diaminobenzidine (GK500705, Dako, Glostrup, Denmark). Three to 5 representative fields of each section were captured and analyzed. The average positive ratio was defined by the symbol and color and analyzed using Image-Pro Plus 6.0 software (Media Cybernetics, Rockville, MD, USA).
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6

Immunohistochemical Analysis of Tumor Markers

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Tumor tissue from trastuzumab‐sensitive and trastuzumab‐resistant patients and xenograft nude mice were fixed in 4% formaldehyde overnight and embedded in paraffin. Serial sections (4 μm) were incubated with horseradish peroxidase‐labeled Polymer anti‐rabbit or anti‐mouse antibody and 3,3′‐diaminobenzidine from DAKO (Copenhagen, Denmark). IHC staining was used to detect the expression levels of GLS1 (1:500; 66265‐1‐Ig, Proteintech), F4/80 (1:1,000; 29414‐1‐AP, Proteintech), CD206 (1:10,000; 60143‐1‐Ig, Proteintech), lymphocyte antigen 6 complex locus G6D (Ly6G; 1:2,000; ab238132, Abcam, Cambridge, UK), CD31 (1:1,000; 11265‐1‐AP, Proteintech), CD68 (1:1,000; ab201340, Abcam), CD11c (1:500; 17342‐1‐AP, Proteintech) and alpha‐smooth muscle actin (αSMA; 1:200; 55135‐1‐AP, Proteintech). Images were obtained using the Slide Scan System SQS‐120P.
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7

Macrophage Apoptosis in Carotid Plaque

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Human carotid plaque and murine aortic root sections were double stained for macrophages and apoptotic cells. Macrophages were labeled with anti-CD68 Ab (Abcam ab201340 1:100) or anti-MOMA-2 Ab (Abcam ab33451 1:50) antibody and apoptotic cells were stained with TUNEL kits (Progema G3250) according to the manufacturer’s instructions. The proportion of TUNEL+ in CD68+ cells in each sample was calculated as the apoptosis rate of macrophages in the plaque. Nine randomized magnified fields were chosen to measure the apoptosis rate.
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8

Multi-Marker Immune Cell Profiling

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The sections were sequentially dewaxed in xylene I and II, rehydrated in an alcohol gradient, and then placed in a citrate antigen retrieval buffer (pH 8.0) for antigen retrieval. Normal serum was added to the slides and blocked at room temperature for 30 min. After blocking, sections were incubated overnight with anti-CD68 (ab201340, Abcam, United States), anti-CD86 (ab53004, Abcam, United States), anti-CD163 (ab182422, Abcam, United States) primary antibody at 4°C and with fluorescent secondary antibody for 1 h at 37°C. The sections were further stained with DAPI staining for 5 min in the dark. Finally, the sections were sealed on cover slips and fluorescence images were captured using fluorescence microscope.
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9

Histopathology and Immunostaining of DLAAA-Treated Eyes

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Two control and two DLAAA animals were euthanized and their eyes enucleated for histopathology. After removing the excess orbital tissue, eyes were placed in Davidson’s Fixative for 24 hours followed by 10% neutral buffered formalin. One fixed eye from each animal was processed, embedded in paraffin, sectioned and stained by HSRL (Mount Jackson, VA) for histopathology, immunofluorescence (IF) and immunohistochemistry (IHC). Histopathology was performed on sections using standard Hemotoxylin and Eosin staining. IF was performed on additional sections of eyes using anti-glial fibrillary acidic protein (GFAP) primary antibody (Cell Signaling - 3670s, 1:500, 1 hour at room temperature), followed by incubation in AlexaFluor 488 secondary antibody (Invitrogen – A-11001, 1:1000, 30 mins at room temperature). IHC was also performed using the following primary antibodies: anti-von Willebrand factor (vWF) (Thermo Scientific - MA514029, 1:200, 1 hour at RT), anti-CD68 (Abcam – ab201340, 1:200, 1 hour at RT), anti-CD105/endoglin (Abcam – ab219362, 1:1700, 1 hour at RT), anti-VEGF (Novus – NB100–664, 1:1000 at RT). This was followed by incubation in either Mouse on Farma HRP (Biocare Medical, BRR4002) or Rabbit on Farma HRP (Biocare Medical, BRR4009) and visualization using Betazoid DAB (Biocare Medical, BDB2004).
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10

Histological Analysis of Wound Healing Dynamics

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On days 7, 14, and 21 after the operation, the wound and adjacent skin tissues were collected, fixed with 4% paraformaldehyde and embedded in paraffin. The embedded samples were sectioned (5 μm thickness) and stained with hematoxylin-eosin (H&E), Masson’s trichrome and Picrosirius Red (Sigma-Aldrich, USA). H&E staining was used to evaluate granulation tissue formation and re-epithelialization. Granulation tissue and newborn epidermis were calculated with ImageJ software. Masson’s trichrome and Picrosirius Red staining were used to analyze collagen deposition and collagen type I/III ratios. In order to evaluate angiogenesis at days 7 and 21 after surgery, CD31 (1:200, Abcam, USA) antibody, α-SMA (1:200, Abcam, USA) antibody and VEGF (1:200, Abcam, USA) were used for immunofluorescence (IF) staining and immunohistochemical (IHC) staining. To evaluate inflammation at days 7 and 21 post-operation, the Pan macrophage marker CD68 (ab201340, Abcam) antibody and M2 macrophage marker CD206 (Ab64693, Abcam) antibody were used for immunofluorescence staining. The nucleus was stained by DAPI. Immunofluorescence and immunohistochemistry stained images were obtained with a confocal microscope (Olympus FV10 inverted microscope, Japan) and an inverted microscope (Axio Vert A1, Carl Zeiss, Germany), respectively. Image J software was also used to analyze the results.
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