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4 protocols using anti fn

1

Integrin-Mediated Cell Adhesion Assay

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The following antibodies were used: antibody against human β1 integrin, isotype antibody control IgG2a,κ, anti-FN, anti-tensin (all from BD Biosciences), anti-human integrin-α5 nonfunction-blocking mAb11 [26 (link)], anti-human integrin-α5 inhibitory mAb16 [27 (link)], anti-human integrin-β1 inhibitory mAb13 [28 (link)], anti-human integrin-αV L230 (ATCC), anti-human FN mAb 13G12 [28 (link)], anti-β3 integrin (sc-7311; Santa Cruz Biotechnologies), anti-phospho-FAK (Fischer Scientific). Other antibodies used were from Sigma-Aldrich: anti-actin, anti-talin, anti-α-actinin, anti-vinculin and anti-paxillin. Secondary species–specific FITC-, Cy3- or AMCA-conjugated antibodies were from Jackson ImmunoResearch Laboratories. Rhodamine-phalloidin was from Fischer Scientific.
Human plasma FN was purified according to Miekka [29 (link)] and 70kD fibronectin fragment was obtained as described [30 (link)]. The 120kD fragment from plasma FN was purchased from Merck. Fibronectin-depleted FBS was obtained by the use of Gelatin-Sepharose 4B (LKB) as described by Knox [31 (link)]. Cellular fibronectin was purified according to Yamada et al. [32 (link)]. HiLyte Fluor™ 488 labeled bovine FN was purchased from Cytoskeleton Inc.
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2

Western Blot Protein Analysis Protocol

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Western blot analyses were performed as described previously [7 (link)]. Briefly, samples (20 μg protein) were subjected to SDS–PAGE. The proteins were transferred onto nitrocellulose membranes, which were probed with the specific antibodies: anti-ZO-1, anti-vimentin, anti-Smad7 and anti-Smurf2 (Santa Cruz, 1:1000), anti-pan-Akt (phospho T308) antibody (Abcam) also known as anti-pAkt, anti-total Akt, (Cell Signaling, 1:1000) and anti-FN (BD Biosciences, 1:1000). A peroxidase-conjugated goat anti mouse IgG (1: 10 000) was used as a secondary antibody. For detection of other proteins or β-actin, the membranes were treated with Stripping buffer and then re-probed with another antibody or β-actin antibody, the latter served as an internal control.
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TGF-β-Induced HK2 Cell Response

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The human kidney 2 (HK2) cells were cultured in Dulbecco’s Modified Eagle Medium/F12 media with 10% fetal bovine serum and 1% penicillin-streptomycin in a humidified environment containing 5% carbon dioxide. The cells were serum-starved overnight and then treated with 10 ng/mL of transforming growth factor-β (TGF-β) for 0, 12, 24, or 48 hours to determine the effect of TGF-β on the HK2 cells. Total protein and RNA were extracted for the western blot assays and quantitative real-time PCR (qRT-PCR). The protocols for the western blot assays and qRT-PCR were detailed in previous research (19 (link)). The following primary antibodies were used: anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (1:1,000; CST, USA), anti-a-SMA (1:1,000; Abcam, USA), anti-CD31 (1:1,000; CST), anti-FN (1:1,000; BD Biosciences, USA), and anti-MMP9 (1:1,000; Abcam).
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Immunofluorescence Analysis of UUO-Induced Kidney Injury

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Paraffin-embedded kidney sections (6-μm thick) were obtained from UUO and sham-operated rats for immunofluorescence. The immunofluorescence staining was performed following procedures described in our previous study17 (link). Tissue sections were stained with an anti-α-SMA (1:50, Millipore, Boston, MA) or anti-FN (1:50, BD, Franklin Lake, NJ) antibody overnight at 4 °C and double-stained with anti-V-ATPase B2 (1:50, Santa Cruz Biotechnology, Santa Cruz, CA) and anti-(P) RR (1:50, Abcam, Cambridge, UK) antibodies.
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