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18 protocols using kanamycin sulphate

1

Systemic and Topical Ototoxicity Induction

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For systemic assays, animals were injected sub-cutaneously with a solution of gentamicin sulphate or kanamycin sulphate in normal saline (400–500 mg/kg; Sigma, Gillingham, U.K.) followed 20–30 min later by an intra-peritoneal injection of bumetanide (50 mg/kg; Sigma) or furosemide solution (100 mg/kg; Sigma). For topical application to the cochlea, anaesthesia was induced with isoflurane, the auditory bulla was accessed through a retro-auricular incision and windowed using a scalpel blade. Aminoglycoside and diuretic solutions (as above) were applied directly to the round window; in some cases, animals were implanted with a gelatin sponge (Cutanplast, Sheffield, U.K.) pre-soaked in an aminoglycoside/diuretic mixture. The bulla was sealed using a plug of fascia held in place with Vetbond adhesive (3 M, Bracknell, U.K.). The muscle layer and wound were closed with absorbable Vicryl suture material (Ethicon, Norderstedt, Germany) and the animal allowed to recover.
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2

In Vitro Nematode Culture and ES Protein Extraction

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Recovered parasites were subsequently washed several times in phosphate buffered saline (PBS) and then incubated at 37°C in sterile 12-well NunclonTM cell culture plates (WVR, Denmark) for five days. Each well contained 10 live larvae in 2.5 mL PBS with antibiotics (200 μg/mL ampicillin and 400 μg/mL kanamycin sulphate) (Sigma-Aldrich, Denmark). Dying larvae were removed on a daily basis to avoid contamination with somatic proteins. After incubation the nematodes were removed and the media was filtered through 0.20 μm Minisart® filters (Sigma-Aldrich, Denmark) and stored at -40°C until further use. Subsamples from wells were inoculated on blood agar plates and kept at 37°C for 48 h to confirm the lack of any bacterial growth in the media. In order to concentrate (2085 μg protein/mL measured by Nanodrop 2000 spectrophotometer, Saveen & Werner ApS, Denmark) and desalt ES solutions and remove antibiotics, we used Centriprep® centrifugal filters (Cut-off value 3000 Da) with Ultracel-3 membrane (Merck Millipore, Denmark) according to the manufacturer´s instructions.
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3

Antibiotic Compounds Acquisition

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Ampicillin sodium salt, kanamycin sulphate, chloramphenicol, carbenicillin disodium salt, oxacillin sodium salt, and gentamicin solution were purchased from Sigma-Aldrich(Rehovot, Israel). Polymixin B was purchased from Fluka BioChemika (Seelze, Germany). and tetracycline hydrochloride was purchased from Sigma-Aldrich (Rehovot, Israel).
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4

Recombinant Protein Expression in E. coli

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All chemicals and biological materials were obtained from commercial suppliers. Lysozyme, DNase I, kanamycin sulphate and chloramphenicol were purchased from Sigma-Aldrich; polymyxin B sulfate from AlfaAesar; LB agar, LB medium, 2 × YT medium and arabinose from Formedium; Escherichia coli (E. coli) 5α, Q5 DNA polymerase, T4 DNA ligase and restriction enzymes from New England BioLabs; Nδ-methylhistidine (MeHis; H-His(3-Me)-OH) from Bachem; E. coli DH10B from Thermo Fisher; and oligonucleotides were synthesized by Integrated DNA Technologies.
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5

Brucella melitensis Rev1 Vaccine Production

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Brucella melitensis Rev1 vaccine strain (Biovar 1) was obtained from Dollvet (Veterinary Vaccine, Medicine, Biological Article Generation Industry and Trade Inc., Sanliurfa/Turkey). Escherichia coli One Shot® Mach1T1R™ served for cloning and plasmid amplification. E. coli BL21 (DE3) served as the expression host. Bacterial strains were stored at –80°C until the time of use. Champion™ pET SUMO Protein Expression System was purchased from Invitrogen, USA. GenElute™ Plasmid Miniprep Kit, Lysozyme from chicken egg white, dNTP Mix, Taq DNA Polymerase, ampicillin, kanamycin sulphate, and albumin from bovine serum (BSA) were purchased from Sigma-Aldrich, USA. Antigen of RBPT was obtained from Pendik Veterinary Control and Research Institute. Ni-NTA colon was purchased from Thermo (USA).
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6

Characterization of C. pseudotuberculosis Strains

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The previously obtained C. pseudotuberculosis CP09 mutant strain [7 (link)], the T1 pathogenic wild-type parental strain [11 (link)], and the caprine-pathogenic strain MIC-6 from the Laboratory of Genetics and Control of Microorganisms (Belo Horizonte, Brazil) bacterial collection were employed in this work. Strains were aerobically grown in “Brain Heart Infusion” broth (BHI, Oxoid) at 37°C. Kanamycin (Kanamycin sulphate 25 μg/mL; Sigma-Aldrich, USA) was added to the mutant growth media. T1 and MIC-6 strains were isolated from caseous lesions of goats and have previously been employed in vaccination trials using goats and mice [11 (link),12 (link)].
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7

Recombinant CBD-Ssp DnaB-hEGF Expression

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E. coli BL21(DE3) harbouring the recombinant plasmid pD861-CBD-Ssp DnaB-hEGF [3070 bp]was used as a host for CBD-Ssp DnaB-hEGF expression. The recombinant plasmid was constructed by our team and synthesized by ATUM (Newmark, CA, USA). The CBD-Ssp DnaB-hEGF was successfully expressed by Yosua et al. (2021) as a 31.4 kDa protein. Ammonium persulphate, coomassie brilliant blue G-250, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (MTT) reagent, sodium chloride, urea, Tris base, and β-mercaptoethanol were purchased from Merck (USA). Acrylamide/bis solution, molecular weight marker, and Tetramethylethylenediamine (TEMED) were purchased from Bio-Rad (USA). EDTA disodium salt was purchased from 1st base (Singapore). Yeast extract was obtained from Oxoid (UK). Dialysis tubing (MWCO 3 kDa), kanamycin sulphate, L-rhamnose, recombinant hEGF, tryptone, tricine, and Triton X-100 were purchased from Sigma-Aldrich (Singapore). Oxidised (GSSG) and reduced glutathione (GSH) were purchased from Tokyo Chemical Industry (Japan). Anti-EGH monoclonal antibody and alkaline phosphatase-conjugated anti-mouse IgG antibody were purchased from Santa Cruz Biotechnology (USA). LB medium was prepared from 1% (w/v) sodium chloride, 1% (v/v) tryptone, and 0.5% (v/v) yeast extract.
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8

Apple Tissue Culture Protocols

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Five types of apple tissue media were used in this study. These included the four media (shoot maintenance medium, shoot regeneration medium, rooting medium and MS20 medium) described by Yao et al. [4 (link)], and a leaf expansion medium (Table S3). All media were adjusted to pH 5.8 with NaOH and then autoclaved at 1.1 kg cm−2 (121°C) for 15 min. For transformation experiments the antibiotics: cefotaxime (Claforan, Roussel NZ Ltd); kanamycin sulphate (Sigma); and the herbicide Glean (Du Pont, active agent chlorsulfuron) were filter-sterilized and added where appropriate to media after autoclaving. For maintaining shoot cultures and rooting, 290-mL plastic containers (Aimed TC290SP, 8 × 6 cm, diameter × height) each containing 50 mL medium were used to culture 8–10 shoots per container. For co-cultivation and shoot regeneration experiments, Petri dishes (8.5 cm diameter) each containing 20 mL medium were used to culture up to 15 explants per plate. The conditions of the plant tissue culture room were set at 24°C and 16-h photoperiod (30 μmol m−2 s−1).
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9

Antioxidant Profiling of Bioactive Compounds

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n-Butanol was supplied by J.T. Baker (Xalostoc, México) and culture media (Difco®) by Becton Dickinson de México, S.A. de C.V. (CDMX, México). In addition, kanamycin sulphate, diosgenin 98%, and p-anisaldehyde 93% were purchased from Sigma-Aldrich (St. Louis, MO, USA, 2017). Methanol and antioxidant reagents DPPH 2,2-Diphenyl-1-picrylhydrazyl, potassium persulfate, ABTS 2,2′-Azino-bis (3-ethylbenzothiazoline-6-sulfonic acid) diammonium salt, sodium acetate, TPTZ (2,4,6-Tris(2-pyridyl)-s-triazine), hydrochloric acid, fluorescein by Sigma-Aldrich, and 2,2′-Azobis(2-methylpropionamidine) dihydrochloride were purchased to Sigma-Aldrich (Toluca, Mexico). Trolox (6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid) Millipore was purchased from Merck (México).
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10

Synthesis and Characterization of Fructo-oligosaccharides

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Glucose, fructose, and sucrose were from Merck (Darmstadt, Germany). Melezitose, kanamycin sulphate, isopropyl-β-D-1-thiogalactopyranoside (IPTG), 3,5-dinitrosalicylic acid (DNS) and beef extract were from Sigma-Aldrich (Saint Lois, MO, USA). Polysorbate 80 was from Santa Cruz Biotechnology (Dallas, TX, USA) and 3-(N-morpholino)-propanesulfonic acid (MOPS) from NzyTech (Lisbon, Portugal). Sodium alginate Protanal LF 120 LS was from FMC Biopolymer (Grivan, Ayrshire, UK). Beghin Meiji SA (Neuilly-sur-Seine, France) kindly supplied the commercial fructo-oligosaccharides mixture “Actilight”. Yeast extract, peptone and tryptone were from Laboratorios Conda S.A. (Madrid, Spain).
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