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73 protocols using acetonitrile acn

1

Proteomic Sample Preparation Protocol

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Tetraethylammonium bromide (TEAB) and iTRAQ reagent were purchased from Applied Biosystems (Milan, Italy). Tryptic soy broth (TSB) was purchased from Beijing Aoboxing Biological Technology Co. Ltd (Beijing, China). Bradford protein assay kit was purchased from Thermo Fisher Scientific (Massachusetts, USA). Trypsin Gold was purchased from Promega Corporation (Wisconsin, USA). Acetonitrile (ACN) and formic acid (FA) of high-performance liquid chromatography (HPLC) grade were purchased from Honeywell Burdick & Jackson (SK Chemicals, Seoul, Korea). Other chemicals were obtained from Beijing Chemicals Co. (Beijing, China).
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2

Green Tea Extraction and Characterization

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Commercially available green tea leaves that are marketed under the brand name Osulloc were purchased from a domestic market (Seoul, Korea) and directly used for experiments. Green tea leaves were pulverized using an electric mill (Rong Tsong Precision Technology Co., Taichung, Taiwan) in order to ensure optimal and reproducible extraction [10 (link),38 (link)]. The resulting powders were tightly sealed and stored at −40 °C until use after filtration through a 1 mm sieve.
Analytical standards of (−)-EGCG (>98%), (−)-GCG (>98%), (−)-EC (>98%), (−)-C (>98%), (−)-EGC (>98%), (+)-GC (>98%), (−)-ECG (>98%), and (−)- CG (>98%) were obtained from Biopurify Phytochemicals Ltd. (Chengdu, China). DPPH, (±)-6-hydroxy-2,5,7,8-tetramethylchromane -2-carboxylic acid (Trolox; 97%), chlorpropamide (≥97%), 4-chloro-dl-phenylalanine (≥97%), formic acid (FA, ≥98%), glutamine (≥99%), maltose (≥99%), and glycerophosphorylcholine (≥98%) were purchased from Sigma-Aldrich (St. Louis, MO, USA). HPLC-grade water, methanol (MeOH), and acetonitrile (ACN) were purchased from Honeywell Burdick & Jackson (Ulsan, Korea).
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3

Proteomic Identification of Id2 Interactome

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Coomassie-stained SDS-PAGE gel separated Id2 immunoprecipitations were excised, completely destained in 50mM ammonium bicarbonate (SIGMA)/50% acetonitrile (ACN) (Honeywell Burdick & Jackson), dehydrated in ACN, rehydrated with trypsin (Promega, Madison, WI, http://www.promega.com) in 50mM ammonium bicarbonate (SIGMA), and digested overnight. Peptides were extracted from the gel with 50% ACN/5% formic acid (Honeywell Burdick & Jackson), dried, resuspended in 5% ACN/1% formic acid, and analyzed by nanoscale microcapillary LC-MS/MS essentially as described [42 (link), 43 (link)] on a LTQ-Orbitrap (Thermo Electron) for data-dependent shotgun sequencing experiments.
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4

Metabolite Standard Preparation for LC-MS

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LC-MS-grade acetone, acetonitrile (ACN), water, and methanol (MeOH) were purchased from Honeywell Burdick & Jackson (Muskegon, MI). Formic acid and all cell culture reagents were obtained from ThermoFisher Scientific (Waltham, MA). Citrate, succinate, α-ketoglutarate, AMP, ADP, and ATP standards were obtained from Sigma Aldrich (St. Louis, MO).
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5

Solid-Phase Peptide Synthesis Protocol

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Mueller-Hinton, Agar SPC, E. coli ATCC 25922, and E. faecalis ATCC 29212 were obtained from ATCC, USA. Rink amide resin, Fmoc-Arg(Pbf)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Lys(Boc)-OH, Fmoc-Trp(Boc)-OH, Fmoc-Gln(Trt)-OH, Fmoc-β-Ala-OH, Fmoc-Phe-OH, Fmoc-Met-OH, Fmoc-Leu-OH, Fmoc-Gly-OH, Fmoc-Ala-OH, Fmoc-Ile-OH, Fmoc-Glu(OtBu)OH, Fmoc-Thr(tBu)-OH, Fmoc-Ser(tBu)-OH, Fmoc-Val-OH, Fmoc-Pro-OH, Fmoc-Cys(Trt)-OH, Fmoc-Lys(Fmoc)-OH, 6-(Fmoc-amino)hexanoic acid (Fmoc-Ahx-OH), 1-hydroxybenzotriazole (HOBt), and N,N-dicyclohexylcarbodiimide (DCC) were purchased from AAPPTec (Louisville, KY, USA). N,N-Diisopropylethylamine (DIPEA), triisopropylsilane (TIPS), 1,2-Ethanedithiol (EDT), 4-methyl-piperidine, pyridine, ninhydrin, phenol, and KCN were purchased from Sigma-Aldrich (St. Louis, MO, USA). Methanol, diethyl ether, N,N-dimethylformamide (DMF), absolute ethanol, dichloromethane (DCM), acetonitrile (ACN), isopropyl alcohol (IPA), and trifluoroacetic acid (TFA) were obtained from Honeywell-Burdick & Jackson (Muskegon, Michigan, USA). All reagents were used without further purification.
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6

Pretreatment of OFPEB biomass

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The standards, glucose, galactose, mannose, arabinose, xylose, fructose, cellobiose, HMF, furfural (Fur), levulinic acid (LA), and formic acid (FA) were purchased from Sigma-Aldrich (Darmstadt, Germany) and TCI (Japan) (>98% purity). Acetonitrile (ACN), ethanol, TFA and formic acid for HPLC and LC-MS grade were purchased from Honeywell Burdick & Jackson. The ultrapure water used in this work was produced by a Millipore MilliQ system. Pretreated OFPEB (high-purity cellulose >85%) was obtained from two-step treatment with peracetic acid (PA) and alkaline peroxide (AP).40 (link)
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7

PAH4 and 3-Methylcholanthrene Extraction and Analysis

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The PAH4 standards, including BaA (CAS No. 56-55-3), CHR (CAS No. 218-01-9), BbF (CAS No. 205-99-2), and BaP (CAS No. 50-32-8), and 3-methylcholanthrene (CAS No. 56-49-5) used as an internal standard (IS) were purchased from Supelco (Bellefonte, PA, USA). All reagents were analytical grade, and the water was obtained from a Milli-Q water purification system (Billerica, MA, USA) (CAS No. 7732-18-5). Acetonitrile (ACN) (CAS No. 75-05-8), ethanol (CAS No. 64-17-5), n-hexane (CAS No. 110-54-3), and dichloromethane (DCM) (CAS No. 75-09-2) were purchased from Burdick & Jackson (Muskegon, MI, USA). Potassium hydroxide (KOH) (CAS No. 1310-58-3) was used for saponification. Sodium sulfate (Na2SO4) (CAS No. 7757-82-6) was used for dehydration and purchased from Junsei (Chuo-ku, Tokyo, Japan). Sep-Pak Florisil cartridges (Waters Corp., Milford, MA, USA) were used for solid-phase extraction (SPE) and purification processes. Polytetrafluoroethylene (PTFE) membrane filters (0.45 μm) were obtained from Agela Technologies (Wilmington, DE, USA).
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8

Atlantic Cod Peptide Bioactivity Evaluation

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Atlantic cod (Gadus morhua) peptides powder with a purity of 84.92% was obtained from Qingdao Yihexing Food Co., Ltd (Qingdao, Shandong, China). Acetonitrile (ACN) and methanol were obtained from Honeywell Burdick & Jackson (Muskegon, MI, USA). Monosodium glutamate was purchased from Ajinomoto Co., Inc. (Tokyo, Japan). Dulbecco's Modified Eagle Medium (DMEM) was obtained from Shanghai XP Biomed Ltd (Shanghai, China). Dimethyl sulfoxide (DMSO, 99.9%) and thiazolyl blue tetrazolium bromide (MTT, 98%) were from Shanghai Macklin Biochemical Technology Co., Ltd (Shanghai, China). Desalted peptides LVDKL (97.16%) and ESKIL (97.22%) were synthesized by ChinaPeptides Co., Ltd (Shanghai, China). Food-grade sucrose and citric acid were from Henan Wanbang Chemical Technology Co. Ltd (Henan, China), and sodium chloride was from Henan Tianma Chemical Technology Co. Ltd (Henan, China).
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9

Quantitative Analysis of Sulfonamides and Trimethoprim

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The sulfonamide analytical standards (sulfathiazole (STZ), sulfamethoxazole (SMX), sulfamerazine (SMR), sulfamethoxypyridazine (SMPD), sulfadimethoxine (SDMX), sulfapyridine (SP), sulfamethazine (SMZ)), and trimethoprim (TMP) were purchased from Sigma-Aldrich Company Ltd. (St. Louis, MO, USA). All analytical standards had a purity greater than 99.0%. Primary secondary amine (PSA) was obtained from United Chemical Technologies, Inc. (UCT Inc., Bristol, PA, USA), and formic acid (98%) was purchased from Sigma-Aldrich Company Ltd. (St. Louis, MO, USA). Anhydrous magnesium sulfate was supplied by J.T. Baker (Center Valley, PA, USA) and sodium acetate trihydrate from Spectrum Chemical Mfg., Corp. (New Brunswick, NJ, USA). Methanol (MeOH) and acetonitrile (ACN) were obtained from Honeywell Burdick & Jackson (Muskegon, MI, USA) and J.T. Baker (Center Valley, PA, US), respectively. All solvents were of HPLC grade, and all reagents were of analytical grade. Ultra-pure deionized water was obtained from a Milli-Q Plus water purification system (Millipore, Bedford, MA, USA). Filtration of the aqueous mobile phase was performed using polyvinylidene fluoride (PVDF) membranes, and polytetrafluoroethylene (PTFE) membranes were used for organic mobile-phase filtration, both with 0.22 µm pore size obtained from Millipore (Bedford, MA, USA).
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10

Quantifying PAHs in Environmental Samples

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The PAH4 standards benzo[a]pyrene (BaP, CAS No. 50-32-8), benzo[b]fluoranthene (BbF, CAS No. 205-99-2), chrysene (CHR, CAS No. 218-01-9), and benzo[a]anthracene (BaA, CAS No. 56-55-3) and internal standards (IS) 3-methylcholanthrene (CAS No. 56-49-5), chrysene-d12 (CAS No. 1719-03-5), and benzo[a]pyrene-d12 (CAS No. 63466-71-7) were obtained from Supelco, Inc. (Bellefonte, PA, USA). All materials and chemicals were of GC and HPLC analytical grade. Acetonitrile (ACN) (CAS No. 75-05-8), dichloromethane (DCM) (CAS No. 75-09-2), methanol (CAS No. 67-56-1), and hexane (CAS No. 110-54-3) were obtained from Burdick & Jackson (Muskegon, MI, USA). Sodium sulfate anhydrous (Na2SO4) (CAS No. 7757-82-6) 99% w/w purity; (Samchun Co., Ltd., Seoul, Korea) was used for dehydration. Distilled water (CAS No. 7732-18-5) and N,N-dimethylformamide (CAS No. 68-12-2) were prepared using a Milli-Q water purification system (Millipore, Billerica, MA, USA). Kovax syringes (3 mL) were obtained from Korea Vaccine Co., Ltd. (Gyeonggi-do, Korea). Polytetrafluoroethylene (PTFE) membrane filters (0.45 mm) were purchased from Advantec Co., Ltd. (Chiyoda City, Japan). Sep-Pak Florisil cartridges (Waters Corp., Milford, MA, USA) were utilized for solid-phase extraction (SPE).
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