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Minipid

Manufactured by Aurora Scientific
Sourced in Canada

The MiniPID is a compact and sensitive photoionization detector designed for the detection and measurement of volatile organic compounds (VOCs). It operates on the principle of photoionization, using a ultraviolet (UV) light source to ionize target molecules and generate an electrical signal proportional to their concentration. The MiniPID provides highly sensitive and real-time measurement capabilities for a wide range of applications.

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18 protocols using minipid

1

Odorant Delivery System Calibration

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Eight monomolecular odorants were obtained from Sigma Aldrich (ethyl-tiglate, ethyl-butyrate, Iso-amyl acetate, amyl acetate, geraniol, eucalyptol, α-pinnen, 2 Phenylethanol). For the odor stimulus presentation, we used a nine-odor air dilution olfactometer (RP Metrix Scalable Olfactometer Module LASOM 2), as described by others (Smear et al., 2013 (link)). Briefly, the odorants were diluted in the mineral oil to 10 ppm concentration. Saturated vapor was obtained by flowing nitrogen gas at flow rates of 100 ml/min through the vial with the liquid odorant. The odor streams were mixed with clean air adjusted to produce a constant final flow rate of 900 ml/min. Odors were further diluted tenfold before reaching the final valve (via a four-way Teflon valve, NResearch). In between stimuli, 1000 ml/min of a steady stream of filtered clean air flowed to the odor port continuously. During stimulus delivery, a final valve switched the odor flow to the odor port, and diverted the clean airflow to the exhaust. Odors were delivered at a flow rate of 1 L/min for 2 s. Inter-trial interval was 30 s. All flows were adjusted to minimize the pressure shock resulting from line switching stabilization after opening the final valve. The olfactometer was calibrated using a miniPID (Aurora Scientific).
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2

Miniaturized Odor Concentration Measurement

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Odor concentrations were measured by miniPID (200B, Aurora Scientific Inc.). Signals from the miniPID were digitized by MiniDigi-1B (Molecular Devices) at 1 kHz and low pass filtered (10 Hz) in pCLAMP10.3 (Molecular Devices).
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3

Odor Presentation with Olfactometer

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Odors (anisaldehyde, cinnamaldehyde, cyclohexanol, estragol, eugenol, isoamyl acetate, methyl salycilate, 1-octanol, phenyl-ethanol, salycilate and vanillin) were presented using a custom-made airflow dilution olfactometer with electronic dilution control to result in a final concentration of on average 40 ppm (range 0.1-520 ppm). Odors were presented individually with a minimal inter-trial interval of 10 s. No intrinsic aversive or attractive behavioral reaction to the odors was observed and all odors were readily learned as S+ as well as S− stimuli. To achieve minimal contamination and a reproducible stimulus shape, the olfactometer was washed by a strong stream of clean air between odor trials, while constant air flow to the animal was established by a final valve at the odor port. A photo ionization detector (miniPID, Aurora Scientific, Ontario Canada) was used regularly to determine the time course of odor presentation and ascertain the absence of contamination.
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4

Quantifying Methyl Salicylate Vapor Dynamics

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A cotton swab dipped in 99% Methyl Salicylate liquid was placed at the center of the table (Figure 1D, gold star) at approximately 0.5 cm from the surface. Concentration was measured for 30 s at distances from 0.5 cm to 15 cm using a Photoionization Detector (PID) (miniPid, Aurora Scientific). Raw measurements had noise peaks at 60 and 72 Hz, broad spectrum high frequency noise, and substantial baseline drift. To remove the noise peaks, two 2nd order Butterworth IIR notch filters were used. To remove high frequency noise, a (0.2 s backward, 0.02 s forward) moving mean filter was used. To remove baseline drift, a baseline estimation and denoising function was used (Duval, 2018 ). The denoised traces (Figure 1E) show large signal fluctuations and, generally, decreasing mean output with distance. Intermittency was calculated as the mean number of points greater than a threshold of 0.005.
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5

Conditioning Flies with Electric Shocks and Odorants

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We applied electric shocks (four 1.5 s long 90 V pulses) to the fly's legs by placing the fly on a custom-build copper grid (Figure 2A and Supplementary Figure 4B). We recorded the shock strength received by an individual fly using a bridge circuit (sampling rate: 16 kHz; Figure 3A, Supplementary Figure 4C, and Supplementary Table 2). We used 1-butanol (BUT) and 4-methylcyclohexanol (MCH) diluted in mineral oil (MO; BUT 1:500, MCH 1:1,000) as odorant stimuli, which we presented as 10 s long stimuli with a custom-build stimulator (Szyszka et al., 2011 (link)). We measured the dynamics of the odorant stimuli with a photo ionization detector (miniPID, Aurora Scientific Inc.). Rapid odorant stimulus termination (Supplementary Figure 4A) allowed us to distinguish between responses to the olfactory CS and to the electric shock US.
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6

Measuring Odor Concentration with miniPID

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To estimate odor concentration, we used a mini photo-ionizer detector (miniPID, Aurora Scientific). PID response amplitude depends on the odor identity, its concentration and the distance from the inlet. Each odor elicits a different response that is related to how effectively the measured odor can be ionized. We measured the door PID responses to the odors and their temporal dynamics at different delays. All TOMs elicited similar response dynamics. PID responses varied between these delays and the order of odor presentation, reflecting the between-odor interactions and inter-pipe flow interactions. However, the odor concentration of the odor constituents and the TOMs in three tested delays was highly similar across trials of the same condition. Thus, each TOM was expected to elicit the same odor percept across all trials. Measurements of odor concentration when placing the PID inlet ~5 cm from the odor ports (i.e., the location of the participants’ nose) revealed that the order of odor presentation was preserved, although the odor concentration was more variable across trials when measured at a 5 cm distance (Figure 1—figure supplement 1C).
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7

Odor Delivery and Calibration Protocol

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Odor stimuli were delivered using a custom-made airflow dilution olfactometer with electronic dilution control. All odor stimuli were calibrated using a mini photoionization detector (miniPID, Aurora Scientific, Ontario, Canada) to form square-pulses of 1% concentration (relative to maximum recorded vapor-pressure in air; Figure S1). Odor stimuli used for initial go/no-go training purposes consisted of peppermint oil and almond oil - components that were not present in the odor mixtures later presented in recordings. For stimuli during whole-cell recordings, two were randomly selected from four potential odor mixtures (Figure S1), and for behaving mice randomly assigned to CS+ or CS-. Odor mixtures were comprised of four to six monomolecular odorants selected for their reported ability to activate dorsal glomeruli (Takahashi et al., 2004 (link)), grouped according to similarity of vapor pressure, and added to the mixture in an undiluted quantity inversely proportional to their relative vapor pressures (Figure S1). Odors were presented with a minimum ITI of 10 s. To minimize contamination, a high flow clean air stream was passed through the olfactometer manifolds during this time. Constant air-flow going to the animal was achieved using a final valve, minimizing any tactile component accompanying the odor stimulus.
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8

Characterizing Stimulus Dynamics with MiniPID

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We used a fast photo-ionization detector (miniPID, Aurora Scientific) to characterize the dynamics of stimulus delivered. Raw data were amplified (gain = 5) and acquired at 15 kHz sampling rate using a custom LabView data acquisition program (Supplementary Fig. 9).
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9

Olfactory Stimulation and Imaging Protocols

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Odor lists are found in Supplementary Table 1. For odor set A, monomolecular odorants were used as stimuli and delivered by a custom-built 20 channel olfactometer controlled by custom-written software in Labview (National Instruments). Individual odors were presented for 5 s with an interstimulus interval of 60 s. Odorants were used at a nominal volumetric concentration of 1 % (v/v) in mineral oil. Because limits on the length of repeated imaging sessions in anesthetized animals (imaging sessions were kept to 3–4 hours or less) necessitated a choice between stimulus panel size and the number of repetitions of each odor, for these experiments we delivered 1–2 repetitions of each odor.
Experiments with odor set B were performed with a different custom-built 16 channel olfactometer (Rokni et al., 2014). Odorants were used at a nominal volumetric concentration of 16 % (v/v) in mineral oil and further diluted by 16 times in air. In this case, odors were presented for 2 s with an interstimulus interval of 40 s. Odors were delivered 3–5 times each. A photoionization detector (miniPID, Aurora Scientific) was used to measure odor concentrations to ensure that they remained consistent between trials.
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10

Olfactometer Calibration and Odor Mapping

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The olfactometer was calibrated using a photo ionization detector (PID; mini PID, Aurora Scientific). The probe was sequentially placed in front of all the odor source outlets under both normal and background odor conditions to verify odor concentration and delivery time. The PID map for odor in the box was generated by placing the probe at X = 1 cm along the breadth and Y = ((15, 33, 45, 57, 69, 81) cm along the length of the box, where Y = 0 marks the entrance of the odor compartments. We were only able to detect the presence and absence of odor at a given position using this technique. Calibration was done using isoamyl acetate as the tracking odor with four repetitions of odor delivery in two sessions each at a given location.
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