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2 protocols using mplus av software package

1

Quantifying Cell Cycle Changes

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Primary fibroblasts were seeded at a density of 4,000 cells/cm2. Parallel cultures were grown in DMEM with GlutaMAX (Gibco) and supplemented with 15% FBS (PAN). For flow cytometry, 48 h cultures were left untreated or exposed to 10 ng/ml MMC (Medac) or initially irradiated with 1.5 Gy from a linear accelerator. Cells were detached using 1× (0.05%) trypsin (diluted from trypsin 0.5%-EDTA 0.2% solution 10×, PAA), pelleted, and stained in medium containing 15 µg/ml Hoechst dye 33342 (Molecular Probes) for 30 min in the dark. Gates were set on vital cells via propidium iodide (PI, 1 µg/ml) exclusion. Split samples were stained with 1 µg/ml 4′,6-diamidino-2-phenylindole (DAPI; Molecular Probes) in buffer containing 154 mM NaCl, 0.1 M Tris pH 7.4, 1 mM CaCl2, 0.5 mM MgCl2, 0.2% BSA, and 0.1% NP40 in dH2O. Univariate flow histograms were recorded on a triple-laser equipped LSRII flow cytometer (Becton Dickinson) using UV excitation of Hoechst 33342 or DAPI, and 488-nm excitation of PI. Resulting cell cycle distributions reflecting cellular DNA content were quantified using the MPLUS AV software package (Phoenix Flow Systems).
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2

Cell Cycle Analysis of X-Ray Irradiated Fibroblasts

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Subcultures of patient fibroblasts were seeded at a density of 4000/cm2 in DMEM with stable glutamine and 15% of FCS (both Sigma, St. Louis, MO, USA) and DNA damage was elicited by exposure of cells to 6 MV X‐ray photons provided by a linear accelerator (Primus series, Siemens Healthcare, Erlangen, Germany) at a dose rate of 3 Gy/min at assay time 0. Matched cultures from treated and untreated fibroblasts were harvested 48 hr postirradiation using Accutase (PAN Biotech, Aidenbach, Germany). For cell cycle analysis, detached cells were pelleted and resuspended at a density of 106/ml in staining buffer containing 4 µg/ml of 4′,6‐diamidino‐2‐phenylindole (DAPI), 100 mM of Tris pH 7.4, 154 mM of NaCl, 1 mM of CaCl2, 0.5 mM of MgCl2, 0.2% of BSA, 0.1% of NP40 in dH2O (Sigma) for a minimum of 30 minutes at 4°C in the dark (Darzynkiewicz, Huang, & Zhao, 2017). Bivariate flow histograms were recorded on an analytical, triple laser‐equipped flow cytometer (LSRII, Becton Dickinson, Franklin Lakes, NJ, USA) using UV excitation/emission at 355/460 nm and FACSDiva software for data acquisition. The resulting cell cycle distributions reflecting cellular DNA content and cell cycle progression were quantified by means of the MPLUS AV software package to assess G2 phase accumulation (Phoenix Flow Systems, San Diego, CA, USA) (Schindler & Hoehn, 1999).
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