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57 protocols using vegfr2

1

Protein Isolation and Western Blot Analysis

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Cells were collected and processed for protein isolation using T-PER, (tissue protein extraction reagent) for tissue and Pierce RIPA buffer for tumor cells (Thermo Scientific, USA). Total protein was separated by Tris/Glysine/SDS gel electrophoresis. Membranes were incubated with primary antibodies against HIF1α (1:1000, R&D), VEGFR2 (1:1000, Abcam), phospho-P38, total-P38, phospho-ERK, total-ERK phospho-AKT and total-AKT (1:1000, Cell signaling), ID1 (1:1000, Biocheck, USA), β-actin (1:5000, Sigma), and HRP-conjugated secondary antibody (1:5000, Biorad).
For nuclear translocation studies, tumor cells were collected after 48 hours of cell culture and proteins from sub-cellular compartments were prepared using protein fractionation kit (Thermo Scientific, USA). VEGFR2 (Abcam) were detected in all compartments. Each of the compartments had different loading controls (Abcam): cell membrane (HSP-60), Nuclear (Lamin A/C), chromatin (Histone H3), cytoplasmic and cytoskeletal (β-actin, Sigma). Western blot images were acquired by Las-3000 imaging machine (Fuji Film, Japan).
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2

Immunocytochemistry Analysis of Cell Markers

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Cells were seeded in eight-chamber slides, grown until confluence and then fixed with 4% wt/vol. paraformaldehyde for 15 min at room temperature. This step was followed by an incubation overnight at 4°C with the primary antibodies reported in ESM Table 3: rabbit anti-human CD146 (Abcam), rabbit anti-human CXCL12 (Cell Technologies, Cambridge, UK), rabbit anti-human vasclular endothelial-cadherin (VE-cadherin, Abcam), mouse anti-human nestin (Abcam), rabbit anti-human PDGFRβ (Santa Cruz, Heidelberg, Germany), rabbit-anti-human vascular endothelial growth factor receptor 2 (VEGFR2, Abcam), rabbit LEPROT (Abcam), and mouse VWF (Abcam). All incubations were performed overnight at 4°C in PBS. Then, the cells were washed with PBS and incubated with appropriate secondary antibody diluted 1:200 in PBS for 2 h at room temperature. Finally, cells were washed with PBS and counterstained with DAPI 1 μg/μl, for 1 min at room temperature. Images of random fields were obtained at ×200 magnification. Antibodies were validated previously by using negative and/or positive cell cultures as controls, according to the literature. Negative controls have been performed for each immunohistochemistry and immunocytochemistry experiment omitting the primary antibody.
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3

Western Blotting of GSC Proteins

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Western blotting was performed as previously described [23 (link)]. Briefly, the total proteins of GSCs or tissues were isolated using a total cell protein extraction kit (KeyGen Biotechnology, Nanjing, China). Protein lysates were prepared, subjected to SDS-PAGE, transferred onto polyvinylidene difluoride membranes and blocked with 2% bovine serum albumin (KeyGen Biotechnology). The primary antibodies against ISL2 (1:1000; Abcam), VEGFA (1:1000; Abcam), VEGFR2 (1:1000; Abcam), p-VEGFR2 (1:1000; Abcam), MEK1/2 (1:1000; Abcam), p-MEK1/2 (1:1000; Abcam), ERK1/2 (1:500; Abcam), p-ERK1/2 (1:500; Abcam), and β-actin (1:2000; Proteintech, Rosemont, IL, USA) were incubated at 4 °C overnight. After secondary antibody (Proteintech) incubation, the bands were detected using a chemiluminescence ECL kit (Beyotime Biotechnology, Beijing, China) and quantified by ImageJ software (National Institutes of Health, Bethesda, MD, USA).
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4

Immunohistochemical Analysis of Lung Tissue

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Rats’ right middle lung lobes were isolated and fixed in 4% paraformaldehyde for 24 h. Five μm thick paraffin sections where processed and stained with H&E and evaluated under an optical microscope (DMI3000B; Leica, Wetzlar Germany). Antigen retrieval for immunohistochemistry was carried out after dewaxing and hydration of the sections by heating in 500 ml of 10% citric acid buffer (pH 6.0) for 10 min. An endogenous peroxidase blocker (ZSGB-BIO, Beijing, China) was next added for 10 min at room temperature, following by incubation with normal goat serum working solution (ZSGB-BIO, Beijing, China) for 10-15 min at room temperature. Then, antibodies against occludin(1:200, rabbit lgG; Abcam, USA), notch1(1:400, rabbit lgG; Proteintech Group, Inc., Chicago, IL), CD31(1:2000, rabbit lgG; Abcam, USA), Hes-1(1:200, rabbit lgG; Abcam, USA), VEGF-A (1:200, mouse lgG; Abcam, USA) and VEGF-R2 (1:250, rabbit lgG; Abcam, USA) were applied and incubated at 4°C overnight. Biotinylated goat anti-rabbit/mouse IgG (ZSGB-BIO, Beijing, China) and HRP-conjugated streptavidin/avidin antibody working solutions (ZSGB-BIO, Beijing, China) were added with 10-15 min incubations at room temperature. Freshly prepared DAB solution (Solarbio, Beijing, China) was used for signal detection, followed by counterstaining with hematoxylin.
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5

Isolation and Characterization of Endothelial Progenitor Cells

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The EPCs isolated from rats were identified using a methodology from a previous study17 (link),18 (link). Mononuclear cells were incubated with Dil-acetyl-low density lipoprotein (LDL, 10
μg/mL; Invitrogen, Carlsbad, CA, USA) and fluorescein isothiocyanate-ulexeuropaeus
agglutinin-1 (UEA-1, 5 μg/mL; Sigma-Aldrich, Saint Louis, MO, USA). EPCs stained with
DiI-acetyl-LDL (absorption wavelength: 555 nm) and UEA-1 (absorption wavelength: 495 nm)
were identified using a confocal microscope. These EPCs were also stained with vascular
endothelial growth factor receptor (VEGFR)-2 (Abcam, Cambridge, UK), CD34, and CD133
(Santa Cruz Biotechnology, Santa Cruz, California, USA), as described in a previous study17 (link),19 (link). Furthermore, in order to characterize the subtype of EPCs, cells with antibodies
against FITC-CD14 (Santa Cruz Biotechnology) and PE-CD45 (Biolegend, San Diego, CA, USA)
were analyzed using a flow cytometer. CD14-/CD45- cells were
considered as advanced EPCs (endothelial colony-forming cells), while
CD14+/CD45+ cells were considered as early EPCs20 (link).
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6

Histological Evaluation of Fat Grafts

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The grafted fat paraffin-embedded sections were stained with hematoxylin, eosin, and immunohistochemistry. The sections were primarily incubated with rabbit anti-human and mouse CD34 (Abcam, USA), VEGFR2 (Abcam, USA), and Ki-67 (Abcam, USA) separately, followed by incubation with horseradish peroxidase-conjugated secondary antibody. Finally, the staining color was developed using the DAB Detection Kit (Maixin, Fuzhou, China). Histologic parameters were examined under a light microscope. HE staining was observed in 5 low magnification field analysis methods for the assessment of fat graft integrity, as evidenced by the presence of intact and nucleated adipocytes and the presence of cysts and vacuoles. Each parameter was graded by two observers independently on a semiquantitative scale ranging from 0 to 5 (0 = absence; 1 = minimal presence; 2 = minimal to moderate presence; 3 = moderate presence; 4 = moderate to extensive presence; and 5 = extensive presence).
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7

Quantitative Protein Expression Analysis

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Total proteins extracted from cells or tumor tissues were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis, and the proteins in the gel were electrotransferred onto polyvinylidene fluoride membranes. The proteins were then probed with antibodies against DR6 (BioVision, Milpitas, CA, USA), IL-6R (Proteintech, Rosemont, IL, USA), VEGF-R-2 (Abcam, Cambridge, MA, USA), VEGF-D and PDGFR-α (Biogot, Nanjing, China), caspase 3, caspase 6, p-IκBα, p-P38, P38, p-STAT3 or STAT3 (Cell Signaling Technology, Danvers, MA, USA) and then incubated with an appropriate horse radish peroxidase (HRP)-conjugated secondary antibody (Cell Signaling Technology). The target proteins were visualized with a chemiluminescence system (Millipore, MA, USA) and exposed to X-ray film. The blot images were scanned and processed using Microsoft Office Picture Manager. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (KangChen Biotech, Beijing, China) was used as an internal control.
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8

Western Blot Quantification Protocol

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An equal amount of protein from each sample (35 μg) was loaded. Protocols previously published were used 31. Membranes were incubated overnight at 4°C with antibodies against VEGFR‐1, VEGFR‐2 (1:500; Abcam, Cambridge, MA, USA), VEGF (1:500; Santa Cruz Biotechnology, Santa Cruz, CA, USA) and β‐actin (1:500; Santa Cruz Biotechnology) or α‐tubulin (1:500; Santa Cruz Biotechnology) as loading controls for cells. Finally, membranes were incubated for 2 hrs at RT in antimouse and anti‐rabbit IgG‐HRP (1:10,000; Santa Cruz Biotechnology). Bands were visualized with ECL (Pierce, Thermo Scientific, Rockford, IL, USA) and detected with Image Quant LAS‐4000 mini (GE Healthcare, Uppsala, Sweden). Protein levels were quantified by densitometry using ImageJ software (NIH, Bethesda, MD, USA). Protein expression intensity was normalized to the amount of loaded protein and plotted as a percentage of the control group.
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9

Comprehensive Analysis of Molecular Markers

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Reagents were purchased from Sigma-Aldrich Co. (St. Louis, MO) unless otherwise indicated. The RNeasy Mini Kits for RNA isolation and the selected mouse and human PCR primers were purchased from Qiagen (Valencia, CA). The mouse and human primers used are described in the Supplementary Information). The antibody for SR was obtained from Bioss (Woburn, MA). The antibodies for α-SMA, CD31, cytokeratin-19 (CK-19), Col1a1, desmin, IL-6, p16, PCNA, TNF-α, VEGF-A and VEGFR-2 were obtained from Abcam (Cambridge, MA). Enzyme-linked immunosorbent assay (ELISA) kits to measure TGF-β1 levels were purchased from Affymetrix Inc. (Santa Clara, CA). Mouse Cytokine ELISA Plate Array I to measure inflammatory cytokines was purchased from Signosis, Inc. (Santa Clara, CA).
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10

Immunofluorescent Analysis of MSCs

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MSCs cultured as above described were seeded on cover slips in 6-well plates. Briefly, After fixing and blocking, cells were labeled at 4°C overnight in the presence of an antibody directed against vWF (Dako Cytomation, Denmark),VEGFR1 (SigmaAldrich),VEGFR2 (abcam), and CD31 (abcam), respectively. Nuclei were labeled by adding 40-6-diamidino-2-phenylindole(Invitrogen,USA). Cells were photographed under a fluorescent microscope (Nikon, Japan).
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