A SpectraMax M5 plate reader (Molecular Devices) was used to determine the OD600 value of each well, and the IC50 value was obtained using a nonlinear regression curve fit in GraphPad Prism 8. Rescue of H. pylori growth from MTCF treatment experiments used 6, 13, 25, 50, and 100 μM MTCF supplemented with 50 μM FL. Actively growing H. pylori was inoculated in each treatment with the initial OD600 of 0.005. Cultures were maintained under microaerophilic conditions at 37 °C for 96 h followed by OD600 analysis.
Brain heart infusion medium
Brain heart infusion medium is a general-purpose growth medium used for the cultivation of a wide range of microorganisms, including bacteria and fungi. It provides the necessary nutrients and growth factors to support the proliferation of diverse microbial species.
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17 protocols using brain heart infusion medium
Determining MTCF Inhibition in H. pylori
Culturing Escherichia coli and Clostridioides difficile
Clostridioides difficile strain 630 was kindly provided by Peter Mullany, UCL. Strain 630 is a virulent, multi-drug resistant strain isolated in 1985 from a hospital patient with severe pseudomembranous colitis which spread to other patients on the same ward in Zurich, Switzerland [47 (link)]. This outbreak strain harbours the two toxins TcdA and TcdB and belongs to the PCR ribotype 012, and has now been adopted as the reference strain for laboratory studies [48 (link)].
C. difficile strain 630 was cultured in Brain Heart Infusion medium (Oxoid) supplemented with 5 μg/mL yeast extract and 0.1% (w/v) L-cysteine (BHIS) containing selective supplements, 250 μg/mL D-cycloserine and 8 μg/mL cefoxitin (Oxoid) (BHIS CC). The strain was incubated overnight at 37 °C in an anaerobic workstation (Don Whitley Scientific, Bingley, UK) with an atmosphere of CO2 (10%), H2 (10%) and N2 (80%).
Cultivation of Oral Anaerobes and E. coli
Escherichia coli DH5α was cultivated in Luria Bertani broth (Miller’s LB broth base; Thermo Fisher Scientific) at 37 °C with shaking.
Cultivation of Clostridium difficile Strains
Anaerobic Culturing of C. difficile
For murine experiments, frozen stocks of wild-type and mutant strains were cultured on CDMN agar plates (C. difficile agar base (Oxoid) supplemented with 7% (v/v) defibrinated horse blood (Lampire Biological Laboratories), 32 mg/L moxalactam (Santa Cruz Biotechnology), 12 mg/L norfloxacin (Sigma-Aldrich) and 500 mg/L cysteine hydrochloride (Fischer) in an anaerobic chamber [27 (link)] at 37°C for 24 hours. Single colonies were picked and grown anaerobically for 16–18 hours at 37°C to saturation in 5 mL of pre-reduced reinforced Clostridial medium (RCM, Oxoid) for inoculation.
For hamster experiments, strains were cultured on blood agar for 5d in order to generate the spore stocks. Terminal colonization was assessed using C. difficile selective agar (Oxoid). In both instances, strains were maintained in an anaerobic workstation, as described above.
Bacterial Culture and Plasmid Transformation
Antimicrobial Susceptibility Profiling of H. pylori
Listeria Monocytogenes Infection Model
Cultivation and Quantification of A. muciniphila
Bacterial Cultivation Protocols for Research
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