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7 protocols using goat anti mouse cy2

1

Immunofluorescence analysis of VE-cadherin

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To detect the intercellular adherence junction protein VE-cadherin, ECs on HFM were gently washed with Dulbecco’s Phosphate-Buffered Saline (DPBS) and fixed in 4% (v/v) paraformaldehyde for 15 min, at room temperature (RT). Following rinsing with Phosphate-Buffered Saline (PBS; w/o Ca2+/Mg2+), ECs were permeabilized and blocked for unspecific antibody binding by incubation with 0.25% Triton-X100, diluted in Tris-buffered saline supplemented with 5% (serum of the respective host of the secondary antibody) for 20 min at RT. Then, the samples were rinsed three times with PBS and incubated with primary anti-VE-cadherin antibody (diluted at 1:50 in 1% bovine serum albumin (BSA) in PBS w/o Ca2+/Mg2+; AbD Serotec, Puchheim, Germany), for 1 h at RT. After three washing steps, fluorescence-labeled secondary antibodies, goat anti-mouse Cy2 (Jackson ImmunoResearch, Cambridge, UK) were applied for 1 h at RT in the dark. Nuclei were stained with Höchst3334 dye (10 µg/mL) added to the secondary antibody incubation for the last 20 min. Samples incubated with isotype-matching antibodies were prepared as controls in parallel. After embedding in mounting medium (Immumount, Dako, Germany), microscopic images were obtained using the above-mentioned fluorescence microscope.
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2

Antibody Characterization for Wnt1 and GFP Detection

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Mouse anti-chick WNT1 5F1-G11-D1 was used for western blots (1/10) while mouse anti-chick WNT1 7B3-A10-F9 was used for immunoprecipitations (1/4). Both antibodies were made in the Burrus lab (Galli et al., 2007). Mouse anti-GFP JL-8 (Clontech) (immunoprecipitation 1/750, colorimetric Westernblot 1/1500, fluorescent western blot 1/15000); Rabbit anti-Phospho Histone H3 (ser10) (Millipore) (1:1,000 dilution); IRDye800 conjugated streptavidin (Licor) (1/5000); Alexa Fluor® 680 Goat Anti-Mouse (Invitrogen) (1/4000); Goat anti mouse Cy2, Goat anti mouse Cy3, Goat anti-Rabbit DyLight649 (Jackson Immunoresearch Labs) (1/200); mouse anti-Islet1 conditioned media (Developmental Studies Hybridoma Bank) (1:20).
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3

Visualizing Catecholaminergic Neurons in Rat Hypothalamus

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After HSD2-immunolabeling, forebrain sections from EB-treated rats (n = 6) were processed to visualize catecholaminergic neurons and fibers in the hypothalamus at the level of the VMH by immunolabeling for tyrosine hydroxylase (TH), the rate limiting enzyme in catecholamine biosynthesis. Sections were incubated in the primary antibody (Millipore; mouse anti-TH; MM_NF-MAB318)3 diluted 1:5000 in 2% NGS for 1 h at room temperature, and then for approximately 48 h at 4°C. On the second day of processing, tissue was brought to room temperature for 1 h, rinsed in 2% NGS, and then incubated for approximately 5 h in the secondary antibody (Jackson Immunoresearch; goat anti-mouse Cy2) diluted 1:300 in 2% NGS.
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4

Oxytocinergic Neurons in EB-Treated Rat Forebrain

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After HSD2-immunolabeling, forebrain sections from EB-treated rats (n = 5) were processed to visualize oxytocinergic neurons and fibers in the hypothalamus at the level of the VMH and extending rostrally to the paraventricular nucleus (PVN) and supraoptic nucleus (SON) of the hypothalamus (−2.12 to −0.80 mm relative to bregma; see Figure 4A). Sections were incubated in the primary antibody (Chemicon; mouse anti-OT; MM_NF-MAB5296)4 diluted 1:25000 in 2% NGS for 1 h at room temperature, and then for approximately 48 h at 4°C. On the second day of processing, tissue was brought to room temperature for 1 h, rinsed in 2% NGS and then incubated for 5 h in the secondary antibody (Jackson Immunoresearch: goat anti-mouse Cy2) diluted 1:300 in 2% NGS.
For analyses of double-immunolabeling, NIS Elements software was used to overlay fluorescent images. HSD2-labeling appeared as bright red cytoplasmic labeling in putative HSD2 neurons (Figures 2A,B); TH- or OT-labeling appeared as bright green labeling in catecholaminergic (Figures 3B–D) or oxytocinergic neurons or fibers (Figures 4B–D). In merged images, therefore, both green and red labeling could be observed (e.g., Figures 3E,E’,F).
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5

TUBA4A and TDP-43 Co-Localization

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Immunofluorescence double-labeling of 5μm sections of the frontal cortex of the R64Gfs*90 TUBA4A mutation case was performed for TUBA4A (1:100, AP13535b, Abgent, San Diego, CA, USA) and TDP-43 (1:1000, 60019-2-Ig, Protein Tech, Manchester, UK), labeled with goat anti-rabbit Cy3 (1:100, 111-165-144, Jackson ImmunoResearch, West Grove, PA, USA) and goat anti-mouse Cy2 (1:50, 115-225-146, Jackson ImmunoResearch, West Grove, PA, USA). Slides were mounted using ProLong Gold Antifade Mountant (Thermo Fisher Scientific, Rockford, IL, USA).
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6

Multimodal Analysis of Neuroinflammation

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For immunohistochemistry experiments, tissues were stained with primary antibodies directed to identify microglia (rabbit anti-Iba-1, 1:4000, Wako or mouse anti-Iba-1 kindly provided by Dr. Bruce Trapp), inflammatory monocytes (rat anti-CD45, 1:2000, Bio-Rad), cerebellar neurons (rabbit anti-calbindin, 1:1000, Cell signaling Technology), pro-inflammatory cytokine interleukin-1 beta (rabbit anti-IL1 beta, 1:200, abcam), myelin basic protein (MBP) (rabbit anti-MBP, 1:2000, Invitrogen), and astrocytes (rat anti-GFAP, 1:4000, Invitrogen). Secondary antibodies were purchased from Jackson ImmunoResearch Laboratory as follows: Cy3-goat anti rabbit, Cy5-donkey anti rat, Cy2-goat anti mouse, biotinylated-goat anti rabbit, biotinylated-goat anti mouse, and biotinylated-rabbit anti rat. Biotinylated antibodies are detected by using stable DAB (Thermo Fisher Scientific) containing diaminobenzidine and hydrogen peroxidase.
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7

Immunofluorescence Assay for Parasite Analysis

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Parasites were grown within HFF on coverslips. Immunofluorescence assays were carried out as indicated previously ([14 (link)] or [58 (link)]). Antibodies and concentrations used were: rat anti-HA (Sigma-Aldrich, 1:50); rabbit anti-c-Myc (Thermo Scientific, 1:1,000); rabbit anti-CSP60 (Reff, 1:1,000); FITC-coupled rat anti-HA (Roche, 3 μg/mL); rabbit anti-IMC1 (gift of Con Beckers, 1:1,000); in Fig 3 the marker for the apicoplast stroma was the naturally biotinylated apicoplast luminal protein acetyl CoA carboxylase revealed by Texas Red coupled-streptavidin (Invitrogen, 1 μg/mL) [59 (link)]. Secondary antibodies: Cy2 goat anti-rabbit, Cy3 goat anti-Rabbit, Cy2 goat anti-mouse, Cy3 goat anti-mouse (all Jackson Immuno Research Laboratories, 1:2,000).
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