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12 protocols using matrigel

1

Transwell Assay for CRC Migration and Invasion

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Transwell assay was used to detect the migration and invasion of CRC cells as previously described.35 (link) CRC cells (migration: 6 × 104 cells, invasion: 1 × 105 cells) in 200 μL of FBS-free medium were seeded into a 24-well transwell cell culture chamber (8 μm pore size, BD), and then 650 μL of 20% FBS medium was added to the lower chamber. The insert chamber was coated with 0.5% Matrigel (657,638, Greiner Bio-One, UK) for invasion assay. Cells at the bottom of the chamber were fixed with 4% paraformaldehyde and stained with 0.5% crystal violet. At least five random fields of view were taken under the microscope and cells were counted. All experiments were repeated three times.
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2

Myoblast Culture Protocol with Matrigel

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96 well plates (Greiner Bio-one, The Netherlands) were coated with Matrigel™ diluted 1:200 in DMEM culture medium containing 1% PSA. The plates containing coating medium were incubated for 60 min at 37 °C, 5% CO2 in a humidified incubator. Plates were freshly prepared prior to experiments. After thawing, myoblasts were seeded at a density of 1800 cells/cm2 and cultured in several media (see below). GM, the medium used for culturing of myoblasts cells, served as benchmark for maximum growth and Advanced DMEM as minimum benchmark.
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3

3D Airway Organoid Influenza Infection

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Three-dimensional (3D) human airway organoids were generated from adult stem cells isolated from the non-tumor lung tissue obtained from patients undergoing lung resection in the Department of Surgery at Queen Mary Hospital. Organoid cultures (approximately 100 µm in diameter) were extracted from droplets of Matrigel (Growth Factor Reduced Basement Membrane Matrix; Corning) by using Gentle Cell Dissociation Reagent (STEMCELL Technologies) and sheared by mechanical disruption with 1-mL pipettes to allow viruses to gain access to the apical and basolateral sides of the epithelium. Around 100–200 organoids were infected with each influenza virus at 106 pfu/mL for 1 h at 37 °C. Organoids were washed with culture medium three times, re-embedded in Matrigel, and plated in prewarmed 24-well suspension culture plates (Greiner). Once solidified, the Matrigel droplets were maintained in complete organoid medium38 (link), and incubated at 37 °C in 5% CO2. The viral titers in the culture supernatants were assessed at 1, 24, and 48 hpi by TCID50 assays in MDCK cells.
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4

Quantitative Viability Assays for hiPSC-CMs

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Day 30–35 post-differentiation hiPSC-CMs were plated on Matrigel at 25,000 cells/well of a 384-well plate (Greiner Bio-One). Cells were treated with TKIs at 0–100 μM for 72 hours unless otherwise specified. Immunostaining qualitatively assessed cell viability per previous protocols (8 (link)). For quantitative viability measurements, cells were treated with CellTiter-Glo Viability Assay (Promega), CCK8 (Dojindo), or PrestoBlue reagent (Life Technologies) per manufacturer-recommended procedures. High-throughput imaging and viability assays were conducted using a Cytation 5 plate reader/imager (BioTek Instruments). Prism (GraphPad) was utilized for curve fitting, LD50 calculations, and statistical analysis.
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5

Invasion Assay for Cancer Cells

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The invasion of cancer cells was performed by a 24-well transwell unit with Matrigel™ (Greiner Bio-One, Frickenhausen, Germany) coated on the upper side of polycarbonate filters into 8 μm filter pore size transwell inserts. The lower well was injected with 800 µl medium containing 10% FBS, without or with indicated concentrations of BPIQ. 1 × 105 H1299 cells was resuspended in 200 µl of serum-free medium were seeded onto a transwell insert and allowed to invade for 16 h. Non-invaded cells on the upper part of the membrane were removed. Cells on the bottom surface of the filters were fixed with 4% paraformaldehyde, stained with Giemsa (Merck), and counted under a microscope. Each experiment was done in triplicate, and the results from three independent experiments were expressed as mean ± SD.
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6

Lung Fibroblast Colony Assay for BOS

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Sorted LPCs were mixed with lung fibroblasts from patients with BOS or from healthy controls (kindly provided by Dr. Barry Stripp from Cedars-Sinai Medical Center) in Matrigel (BD Pharmingen, USA)/basic medium (1:1). Basic medium includes Dulbecco's modified Eagle's medium/F12 (Gibco, USA) supplemented with insulin/transferrin/selenium (Invitrogen, USA), 10% FBS (Invitrogen), 0.25 μg/ml amphotericin B, 100 IU/ml penicillin, and 100 μg/ml streptomycin. Cells in Matrigel were added to 24-well transwell chamber filter inserts (Greiner Bio-One, Germany) and placed in 24-well plates, containing basic medium with or without SB431542 (Ascent Scientific LLC, USA). Fibroblasts were added to the Matrigel at 2 × 106 cells/ml. Cultures were maintained in a humidified 37°C incubator. Colonies were visualized with an inverted fluorescent microscope (OLYMPUS IX73, Japan) on days 4 and 6. Colony-forming efficiency was examined by counting the number of colonies with a diameter of ≥50 μm in each culture.
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7

Organoid Culture and Treatment Assay

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Organoids were collected 5–7 days after passaging and digested with TripLE (Invitrogen) for 20 min at 37 °C. Dissociated cells were passed through a cell strainer with a pore size of 20 μm. For indicated experiments, single living cells were sorted by fluorescence-activated cell sorting (FACS; Becton Dickinson FACSAria cell sorter). Forward scatter and side scatter properties were used to remove cell doublets and dead cells. Single cells were derived from wild-type C57BL/6 organoids unless indicated otherwise. Resuspended cells were mixed with Matrigel (Corning) in a medium to Matrigel ratio of 1:1, plated in 96-well plates (Greiner, catalogue number 655090) in 3.5 μl droplets and exposed to the indicated compounds. All compound stocks were prepared in DMSO, and DMSO was used as a vehicle control. Organoids were treated and fixed at the indicated time points to generate samples for immunofluorescence imaging.
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8

Neurosphere-BMEC Co-culture Protocol

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For co‐culture, medium contained neurospheres was centrifuged at 100 × g for 5 min and dissociated the obtained neurospheres to single cell using ACCUTASE. About 80%–90% confluent BMECs were trypsinized (with 0.02% EDTA) and centrifuged at 150 × g for 5 min and resuspension with serum‐free culture medium. NSCs and BMECs were mixed and resuspension with Matrigel (BD Biosciences, growth factor reduced) at a density ratio of 1:10. The final density of BMECs was 2.0 × 106·ml−1, and the final density of NSCs was 2.0 × 105·ml−1. The 100 μl cell/Matrigel mixture was then evenly spread on the bottom of the confocal dishes (NEST, 15 mm) or cell culture inserts (Greiner Bio‐One, 24‐well), and then, placed in an incubator to solidify. After 1 h, 50 μl mixture of NSCs/Matrigel was evenly spread on the surface of the solidified gels, which was further placed in the incubator for 2 h, and then, the culture medium was added. BMECs‐NSCs co‐culture system was grown in DMEM/F12: Neurobasal medium 1:1, 2% B27 (without vitamin A), 20 ng·ml−1 rh EGF, 10 ng ml−1 rh bFGF and the medium was supplemented with 1% FBS. After 3 days, B27 in the medium was replaced with B27 containing vitamin A. The BMEC‐NSC co‐cultures or control BMEC or NSC monocultures were analyzed following 3 or 7 days of culture, using live cell microscopy and immunofluorescence staining.
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9

Engineered Skin Barrier Development

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In this platform, 4 × 105 RTskin01 fibroblasts were resuspended in 125 µL of a Matrigel® solution diluted 1:8 in serum-free L-15 medium and layered upon the ThinCert inserts with 3 µm pores (Greiner Bio-One, Kremsmunster, Austria, cat. no. 665631), the same used in the MM platform. After 1 h incubation at 20 °C for allowing polymerization, L-15 medium, supplemented with 10% FCS, was added in both apical (AP) and basolateral (BL) compartments. After 1 week, 2.5 × 105 RTpiMI cells/cm2 were seeded on the apical surface.
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10

Primary Lung Organoid Generation

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To generate primary lung organoids, we adopted Sachs et al.46 (link) protocol. Briefly, cryopreserved lung tissue (FBS 10% DMSO) was washed with Advanced DMEM/F12 media containing 1x Glutamax, 10mM Hepes and antibiotics (AdDF++), and digested in 10 ml of complete media for organoids (AO), containing 2 mg/ml of collagenase (Sigma) on an orbital shaker at 37°C for 1–2 h. The digested tissue suspension was sequentially sheared using sterile slides and strained over a filter (100 μm) with 10ml AdDF++ media until obtain a single cell suspension. After inactivation with 2% FBS, red blood cell lysis buffer (Roche,) treatment could be performed if needed. Then, cell counting, centrifugation (400 rcf), and resuspend the lung cell pellet in 10mg/ml Matrigel (Cultrex growth factor reduced BME type 2; Trevigen). Embedded Matrigel cells were dispensed as follow: 3.105 cells in a 40μl drops per well in a pre-warmed 24-well plate (Greiner, M9312). Those organoid cultures were maintained over 4-7 passages until obtaining a stock of pure primary lung-organoid derived epithelial cells.
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