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33 protocols using masson s trichrome

1

Histological Analysis of Skin Wound Healing

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Wounds harvested at POD7 from euthanized mice and fixed in 10% neutral-buffered formalin for paraffin embedding or in Tissue-Tek OCT compound (Sakura Finetek) and flash frozen. Five µM tissue sections were stained with hematoxylin (95057-844; VWR) and eosin (95057-848; VWR) or Masson’s trichrome (Abcam).26 (link) Relative collagen abundance from sections stained with Masson’s trichrome was quantified using Fiji software.
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2

Histomorphometric Analysis of Cardiac Fibrosis

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Fixed zebrafish hearts were wax-embedded and 7 μm sections deparaffinised, rehydrated and washed in distilled water. Acid Fuchsin Orange-G (AFOG) and Masson’s trichrome staining were performed6 (link),73 (link). For morphometric analysis, 6 representative sections of the whole heart were imaged per sample using an Axio Scope.A1 polarized light microscope fitted with an AxioCam HR camera. The scar region and the ventricular surface were demarcated and areas measured using ImageJ software. The percentage of the scar size relative to the entire ventricle was calculated.
Mouse hearts were collected, fixed in 4% PFA overnight and either stored in PBS, or embedded in paraffin wax. 10 μm paraffin sections were stained by Masson’s trichrome (Abcam) according to the manufacturer’s protocol. All images were processed using ImageJ software.
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3

Quantification of Metabolic Biomarkers

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Commercially available kits for assessment of glucose, low density lipoproteins (LDL), high density lipoproteins (HDL), triglycerides (TG’s), total cholesterol (TC), and aspartate transaminase (AST) were purchased from Tulip diagnostics (P) Ltd. (Mumbai, India) and Arkray Healthcare Pvt. Ltd, (Surat, India). Streptozotocin (STZ), hematoxylin and eosin (H&E), Sirius red, poly-l-lysine coating solution, Griess reagent and primers were purchased from Sigma Aldrich (St. Louis, Missouri, United States). Anti- PKR, JNK, and β-actin antibodies and the secondary antibodies were purchased from Santa Cruz Biotechnology (CA, USA). Masson’s trichrome and TUNEL assay kits were purchased from Abcam (Milton, Cambridge, UK). iScript cDNA synthesis kit, iTaq Universal SYBR® Green Supermix and the Immun-Blot® PVDF Membrane were purchased from Bio-Rad (Hercules, CA, USA). Trizol reagent was purchased from In-vitrogen.
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4

Histological Analysis of Kidney Tissue

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All the kidney tissue samples were fixed in neutral formalin and paraffin embedded block was made. After thin sectioning (5 µm), the sections were mounted on slides. The hematoxylin and eosin (H&E) staining was performed to examine the architecture of kidney tissues. Histopathological examination was performed by using a light microscope (Olympus, Tokyo, Japan) and the slide pictures were shot accordingly. The histological findings were performed by double-blinded histopathologist. Furthermore, Masson’s trichrome was used to evaluate the morphology of fibrosis as per the manufacturer’s protocol (Abcam, UK).
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5

Histological and Protein Analysis of Tumor Tissue

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Tumor tissues were formalin-fixed (VWR, Radnor, PA, USA) and embedded in paraffin. Six-µm sections were prepared for Masson’s trichrome (Abcam) and hematoxylin and eosin (H&E) (vector laboratories) as per the manufacturer’s protocols. Images for histology and trichrome staining were taken using an EVOS microscope. Masson’s trichrome was quantified using user-defined macro in ImageJ 1.51j8 software, National Institutes of Health, USA.
Post-treatment tumor tissue was collected, and protein lysates were obtained for western blot analysis. Briefly, the protein lysate was processed on SDS-polyacrylamide gel electrophoresis and transferred to the nitrocellulose membrane. Membranes were then incubated overnight at 4 °C with mouse anti-α-SMA antibody (1:1000), mouse anti-HIF1A antibody (1:1000), mouse anti-vimentin antibody, and mouse anti-GAPDH antibody (1:5000) followed by incubation with secondary antibody anti-rabbit 800 (1:25,000) (LI-COR Odyssey, Lincoln, Nebraska USA). A LI-COR Odyssey Infrared Imaging System Model 912 was used to visualize the protein bands, then calculated based on densitometry normalized to the GAPDH band using ImageJ 1.51j8 software, National Institutes of Health, USA. All densitometry calculations represent an average of three biological replicates.
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6

Histological Analysis of Cartilage Formation

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The retrieved implants were cut in half longitudinally and fixed with 4 % paraformaldehyde solution. The fixed samples were then embedded in paraffin wax and sectioned into 25 μm thickness slices with a microtome. After deparaffinization, the sliced samples were treated with 0.5 % Triton X-100 solution (Biosesang co. Korea) for permeabilization. 1 % (w/v) bovine serum albumin (Sigma Aldrich, USA) solution was used to reduce the non-specific background. Sections were immunostained with a primary antibody against anti-Collagen II (Abcam, UK), and anti-Aggrecan (Abcam, UK) to make the cartilaginous ECM formation visible, followed by incubation with Alexa Flour secondary antibody (Invitrogen, USA) following the manufacturer’s instructions. All samples were counterstained with DAPI (Vector Laboratories, USA). Stained samples were examined using a confocal microscope (LSM 8800, Zeiss, Germany).
For histological experiments, dewaxed sections were stained with staining kits for H&E (Abcam, UK), Alcian Blue (Abcam, UK), Safranin-O (ScienCell Research Laboratories co., USA), and Masson’s Trichrome (Abcam, UK) following the manufacturer’s instructions. Slides covered with cover-slips were scanned using an automatic digital slide scanner (Panoramic MIDI, 3DHISTECH, Hungary).
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7

Quantifying Collagen in Diabetic Wounds

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The collagen content in diabetic wounds was stained with Masson’s Trichrome (Abcam) and the blue intensity was quantified using ImageJ software as previously described. Briefly, images were processed using color deconvolution to extract blue color, which was identified as collagen. The fixed threshold was then applied to each image and the intensity of blue color was analyzed.
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8

Histological Evaluation of Kidney Injury

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Kidney was fixed in 4% paraformaldehyde solution and paraffin embedded. Tissues were cut into 5 μm sections and stained with Hematoxylin and Eosin (H&E), Masson’s trichrome or anti-TNF-α antibody (Cat. ab6671, Abcam), respectively. Subsequently, the slides were imaged and captured under light microscope (200× amplification; Nikon, Tokyo, Japan). The ImageJ software (NIH) was applied to quantify the level of positive staining area. At least 6 non-overlapping fields in the view were scored and the value determined was related to total tissue area in the field.
Glomerulosclerosis was evaluated using Masson’s trichrome staining images. Glomerular sclerosis was assigned score from 0 to 4 based on sclerotic area. Grade 0 means normal; grade 1, area up to 25%; grade 2, area from 25% to 50%; grade 3, area from 50% to 75%; grade 4, area from 75% to 100%. The Glomerular sclerosis score was determined using formula: (1×A1+2×A2+3×A3+4×A4)/(A0+A1+A2+A3+A4), where Ax is the number of glomeruli in each grade.
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9

Quantitative Histological Analysis of Tissue Remodeling

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Specimens were fixed overnight in 10% neutral buffered formalin, processed for paraffin embedding, and 5 µm sections obtained and stained for extracellular matrix (Masson’s trichrome), macrophages (CD68, iNOS), and endothelial cells (VWF) (Abcam, Cambridge, MA). Blood vessels were analyzed by counting vessels that stained for VWF in 18 random fields of view at 20× magnification for all samples in each group using Image J (2 weeks samples: n = 3 – 4 animals/group; 4 weeks samples: n = 34 animals/group; 8 weeks samples: n = 6 – 7 animals/group). Macrophage (CD68) infiltration was measured in 12 random fields of view of three to four sections per sample using Image J (2 weeks samples: n = 3 – 4 animals/group; 4 weeks samples: n = 3 – 4 animals per group; 8 weeks samples: n = 6 – 7 animals per group). Data were presented as area covered per field of view at 20× magnification. The ratio of iNOS/CD68 staining was obtained in serially collected sections stained with CD68 and iNOS, respectively, by comparing CD68 rich areas to the same iNOS stained area in three fields of view for at least three sections per sample (2 weeks samples: n = 3 – 4 animals/group; 4 weeks samples: n = 3 – 4 animals/group; 8 weeks samples: n = 6 – 7 animals/group).
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10

Skin Tissue Analysis in UVB-Irradiated Mice

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Paraffin blocks and tissue specimens from UVB-irradiated dorsal skin tissue of mice were prepared by modifying a previously reported method [19 (link)]. The tissue sections were stained using three staining reagents, namely H&E (Sigma-Aldrich, St. Louis, MO, USA), Masson’s trichrome (Abcam, Cambridge, UK), and toluidine blue (Sigma-Aldrich) to analyze the microfold number, epidermal thickness, inflammatory and mast cell counts, and collagen fiber-occupied region areas, respectively. Histomorphometry was performed using an Eclipse 80i microscope (Nikon, Tokyo, Japan) equipped with iSolution FL (Ver. 9.1) software (iSolutions Inc., Burnaby, BC, Canada).
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