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4 protocols using ha h3663

1

Adipocyte Lipid Metabolism Regulation

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Antibodies against OGT (ab96718), OGA (MGEA5, ab124807), O-GlcNAc (RL2, ab2739), PLIN1 (ab3526), SNAP23 (ab3340), ATGL (ab99532), DGAT1 (11561-1-AP), Fsp27 (CIDE C, ab77115), and p-Ser (phosphoserine, PSR-45) (Abcam); p492-phosphorylated PLIN1 (4855) and p517-phosphorylated PLIN1 (4856) (Vala Sciences); HA (H3663) (Sigma-Aldrich); CGI-58 (ABHD5, 12201-1-AP), PLIN2 (15294-1-AP), and PLIN3 (TIP47, 10694-1-AP) (Proteintech); p563-HSL (4139), phospho-Akt (Ser473, 9271), and Akt (9272) (Cell Signaling Technology); Myc (sc-40), DGAT2 (sc-66859), and β-actin (sc-8432) (Santa Cruz Biotechnology) were purchased from the indicated sources. Horseradish peroxidase-conjugated secondary antibodies were from Santa Cruz Biotechnology. Alexa Fluor 594-conjugated secondary antibodies, BODIPY 493/503, and BODIPY 558/568 C12 fatty acid were obtained from Thermo Fisher Scientific. 4′,6-Diamidino-2-phenylindole (DAPI), OA, Fsk, and IBMX were from Sigma-Aldrich. CL-316,243 was from R&D Systems. OGT inhibitor ST045849 (ST04) was purchased from TimTec. TMG was from Cayman Chemical.
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2

Chromatin Remodeling Protein Antibody Panel

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BAP1 (For western blot and IP) (#13271S), H3K27me3 (#9733S), SUZ12 (#3737S), EZH2 (#5246S), UTX (#33510), H3K27me3 (#9733), H3K27ac (#8173), H2AK119ub (#8240), H2A (#12349) and JMJD3 (#3457S) antibodies were purchased from Cell Signaling. HSP90 (sc-7947) was purchased from Santa Cruz, M2 Flag (F3165) and HA (H3663) were purchased from Sigma. ASXL2 (A302–037A) and RBBP5 (A300–109A) antibodies were purchased from Bethyl Laboratories. Anti-MLL3 (for western blot and IP) was generated against human MLL3 amino acids, and anti-MLL4 was described previously51 (link). Anti-BAP1 (for ChIP-seq) was generated against recombinant full-length BAP1 (α-BAP1-FL) or the aa 10–360 of BAP1 protein (α-BAP1-NTD) in house. Anti-MLL3 (for ChIP-seq) was generated against the aa 443–590 (α-MLL3-NTD) or aa 2951–3091 (α-MLL3-MR) of MLL3 protein in house.
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3

Golgi Complex Protein Localization Protocol

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Mouse anti β-COP G6160 1:1000, Rabbit anti PSMD6 HPA036922 1:1000, Mouse anti HA H3663 1:1000 (Sigma), Rabbit anti Giantin, Rabbit anti TGN46, Mouse anti Giantin ab37266 1:1000, WB 1:100 IF, Giantin ab80864 1:200 IF, Rabbit anti GM130 ab52649 1:5000 WB, 1:200 IF, Rabbit anti PSMD6 ab140461 1:200, IF 1:4000 WB, Rabbit anti PSMD11 ab99414 1:5000, Mouse anti P97/VCP ab11433 |1:2000, Mouse anti 58K-Golgi protein ab27043 1:1000, Mouse anti Grp78 (Bip) ab181499 1:1000, Mouse anti GAPDH AB-AM4300 1:50,000, Rabbit anti Hsp90 ab13495 1:1000, Rabbit anti K48 linked polyubiquitin ab140601-100 1:5000, Rabbit anti Calnexin ab22595 1:1000, Rabbit anti PSMD11 (Cell signaling). Mouse anti alpha-4 SC-271297 1:1000 (Santa Cruz), Mouse anti β-Actin MA5-15739 1:10,000 (invitrogen), Mouse anti alpha-6, produced from hybridoma was a kind gift from Keiji Tanaka. Anti-mouse CD138-APC 561705 1:200 and CD19-PE 115508 1:200 (BD biosciences). Goat anti Mouse 488 A11029 1:400, Goat anti mouse 647 A31571 1:400 (Invitrogen), Goat anti Rabbit 647 AB150075 1:400 (Abcam), Goat anti mouse HRP 115-035-205 1:5000, Goat anti Rabbit HRP | 111-035-003 1:5000 (Jackson labs), K48-TUBE (life-sensors) UM505F 1:50, GFP-GM130 was a kind gift from Martin Lowe, inducible shRNA targeting PSMD6 or luciferase were a kind gift from Yossi Shaul.
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4

Characterization of IRF3 and NF-κB Signaling

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Mouse monoclonal antibodies (Flag: F3165 and HA: H3663) were purchased from Sigma-Aldrich (MO, USA). Anti-IRF3 (#4302S), anti-P65 (#8242), and anti-phosphorylated P65 (#3033) were purchased from Cell Signaling Technology (MA, USA). Anti-Myc (sc-40), anti-β actin (sc-1616), anti-β tubulin (sc-55529), and anti-LAMB1 (sc-56144) were purchased from Santa Cruz Biotechnology (TX, USA). Anti-TRAF7 (11780-1-AP) and anti-TBK1 (67211-1-Ig) were purchased from Proteintech (Wuhan, China). Anti-TBK1 (#3504) was purchased from Cell Signaling Technology. Alexa Fluor 647-labeled anti-mouse (A0473), Alexa Fluor 488-labeled anti-rabbit (A0423), and HA tag Rabbit Monoclonal Antibody (AF2305) were purchased from Beyotime (Suzhou, China). SeV and VSV were provided by Dr. Hong-Bing Shu (Wuhan University, China). The mammalian expression plasmids used in this study were previously described (Xu et al., 2004 (link); Ling et al., 2018 (link)).
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