The largest database of trusted experimental protocols

12 protocols using orca flash4.0 camera

1

Meiotic Metaphase I Nuclei Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Meiotic metaphase I nuclei stained with acetocarmine or Feulgen were imaged using a Leica DM2000 microscope equipped with a Leica DFC450 camera and controlled by LAS v4.4 system software (Leica Biosystems, Wetzlar, Germany). Images were processed using Adobe Photoshop CS5 (Adobe Systems Incorporated, USa) extended version 12.0 × 64.
Meiotic metaphase I nuclei labelled by GISH were imaged using a Leica DM5500B microscope equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS X software v2.0. Images were processed using Fiji (an implementation of ImageJ, a public domain program by W. Rasband available from http://rsb.info.nih.gov/ij/).
Polyacrylamide-embedded meiocytes were optically sectioned using a Leica TCS SP5II confocal laser scanning microscope (CLSM) controlled by Leica LAS-AF v.2.7 software. Z-stacks were deconvolved using Huygens Essential (Scientific Volume Imaging BV). Projections and analysis of 3D pictures were performed using Fiji.
+ Open protocol
+ Expand
2

Feulgen-stained Pollen Mother Cell Imaging

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pollen Mother Cells stained by the Feulgen technique were imaged using a LEICA DM2000 microscope (Leica Microsystems, http://www.leica-microsystems.com/), equipped with a Leica DFC450 camera and controlled by LAS v4.4 system software (Leica Biosystems, Wetzlar, Germany).
All cells labelled by GISH were imaged using a Leica DM5500B microscope equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS X software v2.0. Images were processed using Adobe Photoshop CS5 (Adobe Systems Incorporated, US) extended version 12.0 × 64.
+ Open protocol
+ Expand
3

Microscopic Imaging of Meiotic Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images were taken of 30 PMCs from each of the Chinese Spring wild-type and ttmei1 replicates. Polyacrylamide-embedded PMCs were optically sectioned using a DM5500B microscope (Leica Microsystems) equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS-X software v2.0. Z-stacks were deconvolved using Leica LAS-X software. Images were processed using Fiji, which is an implementation of ImageJ, a public domain program available from http://rsb.info.nih.gov/ij/ (Schneider et al. 2012 (link)).
+ Open protocol
+ Expand
4

Chromosome Imaging and Analysis in Meiotic Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Images of the metaphase I chromosomes were captured using a DM2000 microscope equipped with a DFC450 camera and controlled by LAS v4.4 system software (Leica Microsystems). For each cell, images were captured in up to 8 different focal planes to aid scoring.
Prophase I meiocytes labeled by FISH and immunofluorescence were optically sectioned using a DM5500B microscope (Leica Microsystems), equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS-X software v2.0. Z-stack images of the meiocytes were processed using the deconvolution module of the Leica LAS-X software package. Images were further processed using Fiji (an implementation of ImageJ), a public domain program by W. Rasband available from http://rsb.info.nih.gov/ij/ (Schneider et al., 2012 (link)).
+ Open protocol
+ Expand
5

Super-resolution Neuron Imaging Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Neurons were fixed and immunolabeled with primary antibodies as described above. After three 5-min washes in PBS, neurons were incubated for 1 h with Alexa Fluor 647-conjugated goat anti-rabbit IgG or IgG subclass-specific anti-mouse secondary antibody (Invitrogen, 1:1500) and CF568-conjugated goat anti-mouse IgG1 secondary antibody (Biotium Cat# 20248, 1:1500). Cells were then subjected to three 5-min washes in PBS, then mounted on glass depression slides in a GLOX-MEA (Tris 10 mM pH 8, glucose oxidase 56 mg/mL, catalase 34 mg/mL, 10 mM MEA) solution. Images were acquired using a Leica Infinity TIRF microscope equipped with a ×163/1.49 NA oil immersion objective and a Hamamatsu ORCA flash 4.0 camera using Leica LASX software for image acquisition. Alexa Fluor‐647 and CF568 images with 40,000–50,000 cycles and an exposure time of 10 ms per channel were collected with the 638 nm and 561 nm excitation lines, respectively.
+ Open protocol
+ Expand
6

Microscopic Imaging of Meiotic Spreads

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hybridization signals in mitotic and meiotic metaphase I spreads were examined using a Leica DM5500B microscope equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS X software v2.0. Digital images were processed using Adobe Photoshop CS5 (Adobe Systems Inc., San Jose, CA, USA) extended version 12.0 × 64. Polyacrylamide-embedded meiocytes were optically sectioned using the same Leica DM5500B microscope. Z-stacks were processed using the deconvolution module of the Leica LAS X Software package. Images were processed using Fiji (an implementation of ImageJ, a public domain program by W. Rasband available from http://rsb.info.nih.gov/ij/).
+ Open protocol
+ Expand
7

Feulgen-stained Pollen Microscopy

Check if the same lab product or an alternative is used in the 5 most similar protocols
Pollen grains and Pollen Mother Cells stained by the Feulgen technique were imaged using a LEICA DM2000 microscope (Leica Microsystems, http://www.leica-microsystems.com/, accessed on 31 March 2021), equipped with a Leica DFC450 camera and controlled by LAS v4.4 system software (Leica Biosystems, Wetzlar, Germany). Tetrads labelled by FISH were imaged using a Leica DM5500B microscope equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS X software v2.0. Z-stacks were processed using the 561-deconvolution module of the Leica LAS X Software package. Images were processed using Adobe Photoshop CS5 (Adobe Systems Incorporated, San Jose, CA, USA) extended version 12.0 × 64.
+ Open protocol
+ Expand
8

GISH for H. chilense Genome Characterization

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chromosome preparation and genome in situ hybridization (GISH) were carried out as described previously (Rey et al. 2018 (link)). H. chilense genomic DNA was directly labelled with tetramethyl-rhodamine-5-dUTP (Sigma) by nick translation. Images were taken using a Leica DM5500B microscope equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS X software v2.0.
+ Open protocol
+ Expand
9

Chromosome Preparation and GISH Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Chromosome preparation and GISH were carried out as described previously (Rey et al. 2018) (link).
Aegilops taushii was used as a probe to label wheat D genome. H. chilense and A. taushii genomic DNA were labelled with biotin-16-dUTP and digoxigenin-11-dUTP, using the Biotinnick translation mix and the DIG-nick translation mix respectively (Sigma, St. Louis, MO, USA) according to the manufacturer's instructions. Images were taken using a Leica DM5500B microscope equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS X software v2.0.
+ Open protocol
+ Expand
10

Microscopy Technique for Chromosome Ideogram

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hybridization signals were examined using a Leica DM5500B microscope equipped with a Hamamatsu ORCA-FLASH4.0 camera and controlled by Leica LAS X software v2.0. Digital images were processed using Adobe Photoshop CS5 (Adobe Systems Incorporated, USA) extended version 12.0 × 64.
The ideogram for H1, H16, H7, H. vulgare and T. aestivum chromosomes was based on the hybridization patterns of the probes used in this work and the morphology of chromosomes previously described (Cabrera et al. 1995; Pedersen and Langridge 1997; Prieto et al. 2004; Kato 2011; Szakács et al. 2013; Komuro et al. 2013; Tang et al. 2014) .
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!