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5 protocols using westar nova 2011

1

Quantifying GAP-43 and ATF-3 in DRG and Sciatic Nerve

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DRG or sciatic samples were homogenized in lysis buffer (1% Triton, 20 mM Tris pH 7.6, 1 mM EDTA, 150 mM NaCl, 1 mM NaF, 1 mM NaVO3) with protein inhibitor cocktail (Sigma) followed by total protein quantification. Proteins were resolved in 12% SDS-PAGE gel and transferred to a nitrocellulose membrane (Bio-Rad). The membrane was then blocked with 5% non-fat milk in TBS-T solution for 1 h, followed by incubation with anti-GAP-43 (sciatic sample, Santa Cruz, RRID:AB_640874), anti-ATF-3 (DRG sample, Santa Cruz, RRID:AB_2258513) or anti-β-actin/actin primary antibody overnight at 4°C (1:1000, Santa Cruz, RRID:AB_2223228 /Millipore, RRID:AB_2223041). On the next day, anti-rabbit secondary antibody was incubated for 1 h and chemiluminescence was measured using a ChemiDoc XRS+ imaging system (Bio-Rad) after development in chemiluminescence reagent (Westar Nova 2011, CYANAGEN). Bands intensity was determined using ImageJ software (NIH, United States).
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2

Western Blot Analysis of Phosphorylated Proteins

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Cells were lysed in RIPA buffer, separated by SDS–PAGE and transferred to nitrocellulose membranes following standard protocols. The membranes were incubated overnight with the following primary antibodies: anti-phospho-Src (Tyr416) (2101, 1:1000), anti-phospho-AKT (Ser473) (9271; 1:1000) and anti-phospho-SMAD3 (Ser423/425) (9520, 1:1000) (Cell Signalling Technology Boston, USA); anti–Tubulin (TU-02, 1:1000), and anti–CDK4 (c-22; 1:1000) (Santa Cruz Biotechnology, Inc., CA, USA). Blots were incubated with HRP-conjugated anti-rabbit and anti-mouse secondary antibodies (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Immunoreactivity was detected by Enhanced Chemiluminescence reaction (WESTAR NOVA 2011, Cyanagen, Bologna, Italy) following the manufacturer’s instructions.
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3

Western Blot Analysis of mGlu5 Receptors

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Western blot analysis of mGlu5 receptors was carried out in the hippocampus, prefrontal cortex, corpus striatum, olfactory bulb, hypothalamus, and cerebellum of four CD1 mice randomly selected from the groups used for the assessment of PI hydrolysis. An aliquot of tissue extract was added with protease inhibitors cocktail (Sigma-Aldrich, Cat. # 2714) and after protein determination, protein lysates (40 μg) were separated by SDS-PAGE electrophoresis and blotted onto nitrocellulose. The upper part of the membrane was probed with polyclonal anti-mGlu5 receptor antibody (Millipore, CA, United States, Cat. # AB5675, 1:3,000 dilution), and the lower part of the membrane was probed with monoclonal anti-β-actin antibody (Sigma-Aldrich, Cat. # A2228, 1:10,000 dilution). Immunoreactive bands were visualized by enhanced chemilumiscence (Westar, Nova 2011, Cyanagen, Bologna, Italy) using horseradish peroxidase-conjugated secondary antibodies. Densitometric analysis of the immunoreactive bands was performed by Image J (NIH, Bethesda, MD, United States).
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4

Quantifying Trastuzumab Immobilization on Silica Nanoparticles

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TZ presence on SiNP-TZ was evaluated through dot blot analysis. A total of 100 µL of SiNP-TZ was fixed on nylon membrane with Bio-Dot Microfiltration Apparatus (Bio-Rad, Hercules, CA, USA). As a reference, SiNP and core-shell NPs were used as control. Different amounts of TZ (150, 75, 37 ng) were spotted on the membrane and used as reference. After sample seeding, the membrane was blocked with PBS + bovine serum albumin (BSA) 2% for 1 h at RT under mild shaking, then incubated for 1 h with horse radish peroxidase-conjugated rabbit antihuman IgG polyclonal antibody (GeneTex inc., Irvine, CA, USA), diluted 1:20,000 in PBS + BSA 2%. The membrane was then washed three times with PBS +0.5% Tween 20 and the spots of TZ samples were visualized by enhanced chemiluminescence reagents (Westar Nova 2011; Cyanagen, Bologna, Italy). The light intensity of a single spot on the membrane was detected using Image Studio imaging system (Li-Cor, Lincoln, NE, USA).
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5

Western Blot Analysis of Protein Expression

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Cells were lysed in Laemmli buffer 1x (Tris 60 μM pH 6.8, 2% SDS, 10% glycerol, and 5% 2-β mercaptoethanol). Equal volumes of extracts were separated by SDS-PAGE and transferred to nitrocellulose membranes (Millipore, MA, USA). Blots were blocked for 1 hour in 5% nonfat milk (Bio-Rad Laboratories, Inc., Hercules, CA, USA) prepared in TBST 1x and incubated overnight with the following primary antibodies: α-ERK1 (K23; 1 : 1000) and α-CDK4 (c-22; 1 : 1000) (Santa Cruz Biotechnology, Inc., CA, USA), phospho-p44/42 MAPK ERK1/2 (4370; 1 : 1000) (Cell Signalling Technology Boston, USA), and α-Vimentin (Clone V9; 1 : 1000) (Millipore, MA, USA). Blots were incubated with HRP-conjugated anti-rabbit secondary antibody (Bio-Rad Laboratories, Inc., Hercules, CA, USA). Immunoreactivity was detected by Enhanced Chemiluminescence Reaction (WESTAR NOVA 2011, Cyanagen, Bologna, Italy) following the manufacturer's instructions.
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