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6 protocols using opterra swept field confocal microscope

1

iPSC-Derived Cardiomyocyte Calcium Imaging

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Human-induced pluripotent stem-cell-derived ventricular cardiomyocytes (iPSC-CMs, Axol Biosciences, Cambridgeshire, UK) were plated on fibronectin-coated glass-bottomed chamber slides and maintained as monolayers for eight days at 37°C, 5% CO2 in a humidified atmosphere in Cardiomyocyte Maintenance Medium (Axol Biosciences, Cambridgeshire, UK). Cells were loaded with the fluorescent calcium indicator Fluo-4AM in Hanks balanced salts solution using the Fluo-4 calcium imaging kit according to manufacturer’s instructions (ThermoFisher Scientific, Waltham, MA). After 15 min equilibration in the microscope stage incubator (Okolab, Burlingame, CA) 20X image sequences were acquired at a rate of 400 fps on an Opterra swept-field confocal microscope (Bruker, Middleton, WI) equipped with a 510–520 nm emission filter, an Evolve Delta 512 × 512 EMCCD digital monochrome detector (Photometrics, Tucson, AZ), and a Helios 488 nm solid state laser source (Coherent, Santa Clara, CA).
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2

Live Confocal Imaging of Endosomes

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For live confocal imaging, embryos were anesthetized in 0.02 % tricaine and mounted in 1 % low melting agarose in 10 mM HEPES E3 medium as described [38 ]. Live high speed imaging of endosomal trafficking was performed on a Bruker Opterra swept field confocal microscope (Bruker Nano Surfaces FM, Middleton, WI) equipped with a Nikon CFI Plan Apo VC 60x oil immersion objective (NA 1.40). Embryos were 23 hpf at the beginning of the experiment, and 1–20 1-μm optical sections were captured every 2 s for a total duration of 400 s.
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3

Cytoneme FRAP Microscopy Protocol

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FRAP assays were carried out on a Bruker Opterra swept field confocal microscope, equipped with an enclosure box at 5% CO2 and imaging and objective heater at 37°C. NIH3T3 cells were imaged in phenol red-free standard growth media. For assays involving ionomycin, standard growth media was replaced immediately prior to imaging with phenol red- and serum-free media supplemented with 0.083% DMSO (control), or DMSO with 2.5 µM ionomycin (#9995, CST). Image acquisition was performed with 60x/1.4NA/Oil objective lens (CFI Plan Apo Lambda) with a 30 µm pinhole array and 70 µm width slit. Fluorescence was recorded with a 5 s baseline followed by a complete photobleaching of a cytoneme with 488 nm and 561 nm lasers. Fluorescence recovery was recorded for 120 s with 100 ms exposure per channel with frames taken every 277 ms. Fluorescence recovery of individual regions of interest (ROI) along the cytoneme to its tip were normalized with pre-FRAP equal to 100% and post-FRAP equal to 0%. FRAP curves were corrected for any loss of fluorescence during acquisition (Fritzsche and Charras, 2015 (link)).
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4

Confocal Microscopy of Organoids and Tissues

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For confocal laser-scanning microscopy, the organoids or the tissue was fixed and embedded in agarose or in OCT compound 4583 (Sakura) as already described (37 (link)). Sections of 150 μm (agarose) or 10 μm (OCT) were obtained by using an HM650V vibratome (Thermo Fisher) or a CM3050S cryostat (Leica), respectively. For antigen retrieval, slides were steamed for 20 min in 10 mM citrate buffer (pH 6) and cooled for 30 min. Rabbit anti-cleaved caspase-3 (1:100; Cell Signaling Technology; Asp175), chicken anti-GFP (1:500; Abcam; ab13970), rabbit anti-LC3B (1:200; Abgent; AP1802a), rabbit anti-p65 (1:100; Abcam; 7970), mouse anti-Olfm4 (1:200; Cell Signaling Technology; D6Y5A), phalloidin 568 (Thermo Fisher), and corresponding secondary antibodies (Alexa Fluor 488, 568, or 647; Thermo Fisher) were used. DNA was stained by DAPI (1 μg/mL; Thermo Fisher). The sections were mounted with ProLong Gold Antifade Reagent (Thermo Fisher). Images were acquired using an IX-81 (Olympus) or Opterra swept-field confocal microscope (Bruker) equipped with thermic chamber and CO2 control. Postacquisition image analysis was performed with Fiji 2.0.0 software.
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5

Quantifying Intestinal and Cellular Lipid Droplets

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Images from jejunum sections (1 per animal) were randomly acquired using an Opterra swept-field confocal microscope (Bruker). Areas of interest (2 per animal) composed of intestinal villi (>4,200 µm2) were delineated manually using Fiji software. Images of cultured m-ICcl2 cells were randomly acquired using confocal microscopy (Leica SP5).
Intestinal and cellular LD were quantified using BODIPY fluorescence with Imaris software (Bitplane). For each image, we applied a segmentation protocol to identify individual objects (LD) and to measure their volume.
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6

Worm Sample Preparation for Microscopy

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Preparation of worms for microscopy was done as previously described above. Animals for Figure S3B,C were imaged on an Opterra swept-field confocal microscope (Bruker) using a 60× 1.2NA water objective. Images were captured on an EM-CCD camera (Hamamatsu ImagEMX2). Animals for Figures 3F,G & S3DH were imaged on the Zeiss LSM 880 confocal microscope using a 63x oil objective.
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