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19 protocols using recombinant il 4

1

Macrophage Polarization by ucMSCs

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Macrophages from the BAL fluid samples were cultured in 48-well plates (1 × 104 cells/well) for 6h and stimulated with 20 ng/mL of recombinant IL-4 (R&D Systems, Minneapolis, MN, USA) for 42h. Four groups were set up for ex vivo experiments: PBS (control group), ucMSC (ucMSC-treated group), IL-4 (IL-4-stimulated group), and IL-4 + ucMSC (IL-4-stimulated group treated with ucMSC). ucMSCs (1 × 104 cells/well) were treated for 18h after stimulation with recombinant IL-4.
Similar to ex vivo experiments, in vitro study was conducted using the Transwell Permeable Support (Costar, Kennebunk, ME, USA). The MH-S (ATCC, Manassas, VA, USA) was cultured in 48-well plates (1 × 104) and stimulated with recombinant IL-4 (R&D systems). Four groups were set up for the experiments: PBS (control group), IL-4 (IL-4-stimulated group), IL-4 + DucMSC (IL-4-stimulated group directly pretreated with ucMSC), and IL-4 + TucMSC (IL-4-stimulated group indirectly treated with ucMSC via transwell system).
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2

Generation of Immature Dendritic Cells

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Healthy blood donors that volunteered were HLA-typed by the tissue typing laboratory of the Charité, Campus Virchow Klinikum (Berlin, Germany). DCs were generated as described previously [10 ]. Briefly, peripheral blood mononuclear cells (PBMCs) were isolated via Fi-coll density gradient centrifugation. CD14+ monocytes were enriched by using magnetic microbeads (Miltenyi Biotec, Bergisch-Gladbach, Germany), and 3 × 106 cells/well were cultured in six-well culture plates (TPP) in complete RPMI medium, containing 2 mM L-glutamine, 10 mM HEPES (Gibco), penicillin (100 U/ml), streptomycin (100 μg/ml), 10% FCS, 1000 U/ml of granulocyte-macrophage colony-stimulating factor (GM-CSF) (sargramostim, Leukine®, Berlex, Richmond, CA), and 100 U/ml recombinant IL-4 (R&D Systems, Wiesbaden-Nordenstadt, Germany). Fresh medium supplemented with cytokines was added every second day to the wells, and cells were harvested between day 6 and day 8. Immature DCs displayed a down-regulated CD14 expression and were further defined by the expression of high levels of CD11b and low levels of CD80 [10 ].
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3

Immunoblotting of EMT Markers

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Polyclonal antibodies against p-Akt (Ser473), Akt, and p-GSK3β, and monoclonal antibodies to β-catenin and Vimentin, were purchased from Cell Signaling Technology (Danvers, MA, USA). Polyclonal antibodies to JNK, Slug, Sox2, p-Stat6, Stat6, Ang-2, and VEGF, and monoclonal antibodies to p-JNK, β-actin, and Oct4 were obtained from Santa Cruz Biotechnology (Dallas, TX, USA). Polyclonal antibody to Snail was purchased from Novus Biologicals (Littleton, CO, USA). The monoclonal antibody E-cadherin was obtained from BD Transduction Laboratories (San Jose, CA, USA). The polyclonal antibody Twist was purchased from Abcam Inc. (Cambridge, MA, USA). Monoclonal antibodies to IL-4 and IL-4Rα were obtained from R&D systems (Minneapolis, MN, USA). Anti-mouse and anti-rabbit Alexa Fluor 488 and 555-conjugated secondary antibodies were purchased from Thermo Fisher scientific (Waltham, MA, USA). Inhibitors of JAK, PI3K (LY294002), and JNK (SP600125) were purchased from Merck Millipore (Darmstadt, Germany). Recombinant IL-4 was obtained from R&D systems (Minneapolis, MN, USA).
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4

C2C12 Myoblast Differentiation and IL-4 Treatment

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C2C12 myoblast cells (ATCC, Manassas, VA, USA) were maintained in growth medium (GM) consisting of Dulbecco’s modified Eagle’s medium (DMEM; Life Technologies Inc., Carlsbad, CA, USA) supplemented with 10% bovine growth serum (Cytiva, Tokyo, Japan) and 1% penicillin–streptomycin (Life Technologies Inc.). To induce the differentiation of myoblast cells, GM was replaced with differentiation medium (DM), DMEM supplemented with 2% horse serum (Life Technologies Inc.) and 1% penicillin–streptomycin.
Recombinant IL-4 (R&D Systems, Minneapolis, MN, USA) was used as previously described [25 (link),26 (link)]. IL-4 was dissolved in distilled water containing 0.1% bovine serum albumin (BSA; Wako, Tokyo, Japan) and added to the culture medium at a final concentration of 1 to 100 ng/mL.
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5

Cytokine Quantification in Biological Samples

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Supernatants collected from re-stimulated lymph node cells or BAL samples were added to Nunc Maxisorp 96-well plates (Thermo Fisher Scientific), which had been coated with purified anti-mouse IL-4 antibody (Thermo Fisher Scientific), IL-5 (BD Biosciences), IL-13 (Thermo Fisher Scientific) and IFN-γ (Thermo Fisher Scientific) all at 2 μg/ml O/N at 4 °C. Plates were subsequently blocked with 1% BSA. Cytokines were detected with biotinylated anti-mouse IL-4 (Thermo Fisher Scientific), IL-5 (Thermo Fisher Scientific), IL-13 (Thermo Fisher Scientific) and IFN-γ (Thermo Fisher Scientific) all at 0.5 μg/ml. Recombinant IL-4, IL-5, IL-13 and IFN-γ (R&D systems) were used as a standard (starting concentration 10 ng/ml). Antibody binding was detected with streptavidin-HRP (BD Biosciences) and developed with TMB substrate set (BD Biosciences).
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6

Polarization of Macrophage Subtypes

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Type I subset and M2 macrophages were polarized as described previously (29 (link)). Primary BMDM macrophages were polarized toward the M1 phenotype with recombinant IFN-γ (100 U/ml, R&D Systems 485-ML) and/or LPS (100 ng/ml, L6529; strain 055:B5; Sigma-Aldrich, St. Louis, MO, USA) or toward the M2 phenotype with recombinant IL-4 (R&D Systems 404-ML) or recombinant IL-13 (R&D Systems 413-ML) (10 ng/ml) for the specified times under normal culture conditions. Unpolarized cells (M0) served as controls. BMDMs were washed with PBS and harvested for total RNA isolation.
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7

Isolation and differentiation of PBMC

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Peripheral blood mononuclear cells (PBMC) were isolated from heparinized blood samples by gradient centrifugation according to the protocol provided by GE‐Healthcare (Ficoll‐Paque PLUS). B cells (CD19+) and monocytes (CD14+, CD16) were isolated from PBMC by negative selection using the EasyEights™ EasySep™ Magnet (18103), the EasySep™ Human B Cell Isolation Kit (17954), and the EasySep™ Human Monocyte Isolation Kit (19359) all provided by StemCell™ Technologies.
B cells were maintained for up to 2 days in Roswell Park Memorial Institute medium (RPMI) 1640 medium (R8758, Roswell Park Memorial Institute medium; Sigma‐Aldrich), supplemented with 10% fetal bovine serum (FBS, 10270–106), 1% antibiotic‐antimycotic solution (AA, 15240062), and 1% l‐glutamine solution (l‐Gln, 11500626) all provided by Gibco, Thermo Fisher Scientific.
Monocytes were seeded and differentiated to dendritic cells (DC) in complete RPMI 1640 medium containing 10% FBS, 1% AA, 1% l‐Gln and supplemented with 800 IU/ml recombinant GM‐CSF (Granulocyte macrophage colony‐stimulating factor) and 500 IU/ml recombinant IL‐4 (R&D Systems) for 6 days at 37°C and 5% CO2.
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8

Notch Signaling Pathway Evaluation

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Penicillin, streptomycin, tetracycline, Dulbecco’s Modified Eagle’s medium, and fetal bovine serum were obtained from Invitrogen (Life Technologies, Carlsbad, CA, USA). The protein assay kit was from Bio-Rad (Hercules, CA, USA). Fibronectin and S100A4 were from Sigma-Aldrich (St. Louis, MO, USA); CD31 antibodies were from BD Biosciences (BD Biosciences, San Jose, CA, USA); antibodies against Jagged 1, and Hes 1, Hey 1, and Hes 5 were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Antibodies against Notch 1, N1ICD, RBP-Jκ, and iNOS were from Cell Signaling Technology (Danvers, MA, USA). The fluorescent-700/800 secondary antibodies were obtained from Invitrogen (Carlsbad, CA, USA), an antibody against CD45 was from Millipore (Billerica, MA, USA), and antibodies against F4/80, proliferating cell nuclear antigen, GFP, and rabbit anti-α-SMA were from Abcam (Cambridge, MA, USA). The GFP antibody was purchased from Rockland Immunochemicals (Limerick, PA, USA), and lipopolysaccharide and recombinant IL-4 were purchased from R&D Systems (Minneapolis, MN, USA). BrdU Labeling and Detection Kits were obtained from Roche (Indianapolis, IN, USA).
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9

Naïve T Cell Differentiation Protocol

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Naïve CD4+CD25− T cells were isolated ex vivo from the spleens of the mice described above by magnetic microbead negative selection with >98% purity (Miltenyi #130-104-454). The isolated CD4+CD25− T cells were then cultured on irradiated splenic feeder cells (300 Gy) at a ratio of 1:5 (200,000 T cells:1 million irradiated splenocytes in a 24-well plate) in RPMI supplemented with 10% FBS, sodium pyruvate, penicillin/streptomycin, HEPES and beta-mercaptoethanol and 2.5μg/mL of soluble anti-CD3 antibody (eBioscience). The naïve T cells were then differentiated in vitro by adding the following cytokines to each generate each subset: Th1, 10ng/mL IL-12 (R&D Systems), 10μg/mL anti-IL-4 (eBioscience, clone 11B11), 1μg/mL anti-IFNγ (eBioscience); Th2, 1000U/mL recombinant IL-4 (R&D Systems), 10μg/mL anti-IL-12 (eBioscience), 10μg/mL anti-IFNγ; Th17, 20ng/mL IL-6 (R&D Systems), 2.5ng/mL TGFβ (R&D Systems), 10μg/mL anti-IFNγ; Treg, 3ng/mL TGFβ. On day 3 post stimulation, cells were split 1:2 and expanded with IL-2 for an additional 2 days (30 (link), 31 (link)). Cells were then harvested, washed 1x with PBS, pelleted and snap frozen.
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10

Isolation and Culture of Primary Murine Microglia

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Primary microglia cultures were obtained from P2 C57Bl/6 mice. Briefly, we removed meninges from each brain in cold KRB medium containing albumin 0.3% (Sigma) and MgCl2 0.04% (Sigma). Cortices were minced and incubated in 10 ml of KRB including Trypsin 0.25 mg/ml (Sigma) for 15 min at 37 °C, then we added 10 ml of complete KRB supplemented with DNase I 0.05 mg/ml (Sigma) and SB-Trypsin inhibitor 0.08 mg/ml (Sigma) to stop the reaction. Cells (3 × 106/T75 flask) were cultured in DMEM (Gibco) supplemented with 10% FBS (Gibco), L-glutamine (1 mM) (Gibco), penicillin (100 U/ml), (Gibco) and streptomycin (100 mg/ml), (Gibco) for 12 days. Microglia were shaken off and 3 × 105 cells plated on glass coverslips. Cells were further washed after 1 h to remove oligodendrocytes progenitors and then treated with recombinant IL-4 (0.08, 1.24, 2.5, 5, 10, 20, and 40 ng/ml), (R&D system) for 12 h. Cultures were paraformaldehyde fixed for 5 min at room temperature and used for immunofluorescence. While, parallel cultures were used to obtain total RNA extracts and used for real time PCR.
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