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4 protocols using tris buffered saline (tbs)

1

Protein Extraction and Immunoprecipitation Protocol

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Proteins were extracted with 1% Triton X100-containing lysis buffer: 50 mM HEPES (pH: 7.5); 150 mM NaCl; 10 mM glucose; 2 units/mL hexokinase (Sigma); and protease inhibitor cocktails. Detergent-soluble and insoluble fractions were separated by centrifugation at 18,000× g at 4 °C for 10 min. Protein concentration of the soluble fraction was determined by a standard Bradford assay system. For pulldown experiments, the cell lysate was treated using anti-Flag agarose beads (Sigma), as previously described [22 (link)]. Protein samples were subjected to reducing SDS-polyacrylamide gel electrophoresis (SDS-PAGE) and subsequently transferred onto a polyvinylidene difluoride membrane (Millipore, Burlington, MA, USA). The membrane was blocked with tris-buffered saline containing 5% skim milk and 0.05% Tween 20 (Nacalai, Kyoto, Japan) at 4 °C overnight. Next, the proteins were detected using indicated primary antibodies and secondary antibodies. Finally, they were visualized with enhanced chemiluminescence and the ChemiDoc system (Bio-Rad, Hercules, CA, USA). Densitometric analysis was performed using the ImageJ software version 1.53 (National Institute of Health, Bethesda, MD, USA). The expression of proteins of interest was normalized to that of αTubulin. The error bars in figures represent the standard deviation for at least three independent experiments.
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2

Protein Detection via Western Blotting

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Cell lysates were prepared using the alkaline lysis method [[23] ], and sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS/PAGE) was used to visualise proteins. Proteins were transferred to Immobilon-P membranes (Merck Millipore, Burlington, MA, USA) utilising a Trans-Blot Turbo Transfer System (Bio-Rad, Hercules, CA, USA). Following transfer, membranes were blocked with 2% skim milk in Tris-buffered saline containing 0.05% Tween 20 (Nacalai Tesque) for 30 min at room temperature. Membranes were then incubated with an anti-GFP antibody at a dilution of 1 : 10 000 (JL-8; Clontech, Mountain View, CA, USA) or anti-Ape1 antiserum at a dilution of 1 : 10 000 [[24] ] for 60 min at room temperature. Subsequently, the membranes were washed once and treated with horseradish peroxidase-labelled anti-rabbit or -mouse secondary antibodies (Jackson ImmunoResearch, West Grove, PA, USA) at a dilution of 1 : 5000 for 30 min, followed by three washes. Chemiluminescent signals generated using ECL Prime (Cytiva, Marlborough, MA, USA) or ImmunoStar LD were detected on an IR-LAS 1000 imaging system.
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3

Characterization of Extracellular Vesicles

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EVs were labeled with FM4-64 and the enumeration and sizing of labeled and non-labeled EVs were performed with a ViewSizer 3000 (software version 1.9.0.4518, HORIBA, Kyoto, Japan) using a 520-nm laser and a 650-nm filter. The zeta potential of EVs was assessed by a zeta potential analyzer (ELSZ-2000, Otsuka Electronics, Osaka, Japan) at 25 °C. EVs suspended in TBS (pH 7.4, Nacalai Tesque) were deposited on a carbon film-coated copper grid treated by glow discharge and then stained with 2% uranyl acetate solution for negative staining. The prepared grid was observed with the transmission electron microscope JEM-1400 (JEOL Inc., Tokyo, Japan).
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4

Western Blot Analysis of Protein Expression

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HEKa cells were washed with Tris‐buffered saline (TBS, Nacalai Tesque) and lysed in radioimmunoprecipitation assay buffer (Nacalai Tesque) containing protease inhibitors (Millipore) and phosphatase inhibitors (Thermo Fisher Scientific). Equal amounts of total protein quantified using the Pierce BCA Protein Assay were separated using sodium dodecyl sulphate‐polyacrylamide gel electrophoresis and transferred to a polyvinylidene fluoride membrane (Bio‐Rad Laboratories, CA, USA). After blocking for 1 h with 5% skim milk (Nacalai Tesque) or 0.5% bovine serum albumin (BSA) solution (Nacalai Tesque), the membranes were incubated with the antibodies listed in Table 1, with β‐actin as a loading control. Signals were detected using SuperSignal™ West Dura Extended Duration Substrate (Thermo Fisher Scientific) with a Lumino Imager (LAS‐4000 mini, Fujifilm).
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