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401 protocols using bone morphogenetic protein 4 (bmp4)

1

Modulating WNT Signaling in Chondrogenesis

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For WNT ligands treatment during chondrogenesis, pellets were treated with either 10 ng ml−1 TGF-β3 (control group) or a combination of 10 ng ml−1 TGF-β3 and 100 ng ml−1 individual WNT ligand (WNT2B, WNT3A, WNT4, WNT5B, or WNT7B, all from R&D system) in chondrogenic medium from d0 to d42 as appropriate. For WNT ligands treatment during the Cp stage, cells were supplemented with either 20 ng ml−1 BMP4 (R&D Systems, #314-BP-010) alone (control group), a combination of 20 ng ml−1 BMP4 and 1 μM C59, or a combination of 20 ng ml−1 BMP4 and 100 ng ml−1 WNT3A (R&D Systems, #5036-WN-010) in mesodermal differentiation medium from d7 to d12.
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2

Differentiation of Embryonic Lineages

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Differentiation to specific embryonic lineages was performed in CDM-PVA, which has the same composition as CDM-BSA, with polyvinyl alcohol (PVA, 1 mg/ml, Sigma) instead of BSA. For early mesoderm differentiation, cells were grown in CDM-PVA with FGF2 (20 ng/ml), LY294002 (10 μM, Sigma) and BMP4 (10 ng/ml, R&D) for 36 h then treated with CDM-PVA with FGF2 (20 ng/ml) and BMP4 (50 ng/ml) for 3.5 days to generate LM as previously described (Cheung et al., 2012 (link)). To generate epicardium, LM cells were differentiated in CDM-PVA with BMP4 (50 ng/ml), recombinant human WNT3A (25 ng/ml, R&D systems) and RA (4 μM, Sigma) at a seeding density of 2.5×103/cm2 for 10 days. To investigate the role of WNT pathway, LM cells were differentiated with IWP2 (2 μM, Tocris) along with BMP4 and RA. Subsequently, epicardial cells were re-suspended in CDM-PVA with PDGF-BB (10 ng/ml, Peprotech) and TGFβ1 (2 ng/ml, Peprotech), designated as PT for 12 days. Epicardial cells were differentiated with PT in the presence of Y27632 (2 μg/ml, Calbiochem) to study the role of RhoA/RhoK in EPI-SMC differentiation. To generate EPI-CFs, epicardial cells were differentiated in CDM-PVA with VEGF (50 ng/ml, Peprotech) and FGF2 (50 ng/ml) for 12 days. HESCs were grown in CDM-PVA with FGF2 (12 ng/ml) and SB431542 (10 μM, Tocris) for 7 days to generate neuroectoderm (Vallier et al., 2009 (link)).
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3

Granulosa Cell Differentiation from Human iPSCs

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For granulosa cell differentiation, human iPSCs were manually split and plated onto ultra-low attachment multiwell plates (Corning) to form embryonic bodies (EBs). Cells were cultured in maintenance medium (80% DMEM/F12, 20% knockout serum replacement, 4 ng/mL bFGF, 0.1 mM -mercaptoethanol, and 1% NEAA (Gibco)) for 48 h. Cells were then treated with 6 ng/mL BMP4 (R&D systems) for 24 h. On day 3, cells were then cultured in 10 ng/mL BMP4, 6 ng/mL WNT3A, 6 ng/mL activin-A, and 5 ng/mL bFGF (R&D Systems) for 72 h. Then EB-derived mesoderm progenitors were transferred to gelatin-coated plates and incubated in the maintenance medium supplemented with 10 ng/mL BMP4, 5 ng/mL bFGF, and 25 ng/mL follistatin (R&D Systems) for 6 days.
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4

Oligodendrocyte and Astrocyte Differentiation

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Passage 3 oligodendrocyte precursor cells were seeded in PDL/laminin-coated 24-well plates at 1 × 104 cells/well for 3 days. At 60% confluency, they were divided into two groups, which were differentiated in oligodendrocyte and type-2 astrocyte differentiation medium, respectively. Oligodendrocyte differentiation medium was composed of DMEM/F12 containing 0.5% N2, 1% B27, 0.1% bovine serum albumin, 5 mg/mL insulin, 30 ng/mL T3 (Sigma), and 10 ng/mL NT3 (Upstates, Billerica, MA, USA). Type-2 astrocyte differentiation medium (induced by bone morphogenetic protein-4) consisted of DMEM/F12 containing 0.5% N2, 1% B27, 0.1% bovine serum albumin, 5 mg/mL insulin, and 20 ng/mL bone morphogenetic protein-4 (R&D Systems Inc., Minneapolis, MN, USA).
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5

Directed Differentiation of hiPSCs into EBs

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hiPSCs were differentiated as previously described (Carvajal-Vergara et al., 2010 (link)) with the following modifications. hiPSCs were cultured on Matrigel-coated plates for 2 days for feeder depletion. For generation of EBs, hiPSCs were dissociated with 1 mg/mL collagenase B (Roche) for 15 min. Cell clumps were centrifuged at 200 × g for 2 min, and resuspended to clusters of 50–100 cells in differentiation medium containing StemPro 34 (Life Technologies), 2 mM L-glutamine (Life Technologies), 4 × 10−4 M monothioglycerol (Sigma), 50 μg/mL ascorbic acid (Sigma), and 150 μg/mL transferrin (Roche). EBs were maintained in 6-well ultra-low attachment plates (Corning) at 37°C in 5% CO2, 5% O2, and 90% N2. Differentiation medium was supplemented with 10 ng/mL BMP4 (R&D Systems) (day 0), 10 ng/mL BMP4 (R&D Systems) and 15 ng/mL Activin A (Peprotech) (day 1), and 1.5 μM IWR-1 (Sigma) (day 4). After day 8, the medium was changed every 5 days to medium without supplements. EBs were prepared for cell sorting on day 25 of differentiation.
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6

Directed Differentiation of Human Pluripotent Stem Cells

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For the DE induction, 5 × 104 cells/cm2 were seeded on 6-well plates (Cellcoat, UK) and cultured in RPMI medium (Mediatech, Los Altos, CA, USA) containing GlutaMAX (Life Technologies), penicillin/streptomycin, and 0.5% defined fetal bovine serum (FBS, HyClone, Cytiva Europe GmbH, Spain) and supplemented with each one of the following combinations of growth factors: (i) 100 ng/ml Act A (R&D Systems, UK), (ii) 100 ng/ml Act A+50 ng/ml Wnt3A (R&D Systems), (iii) 100 ng/ml Act A+50 ng/ml bone morphogenetic protein-4 (BMP4, R&D Systems), (iv) 100 ng/ml Act A+50 ng/ml Wnt3A+50 ng/ml BMP4, (v) 100 ng/ml Act A+10 ng/ml FGF4 (R&D Systems), or (vi) 100 ng/ml Act A+10 ng/ml basic-FGF (bFGF, Life Technologies). Three days after induction, the medium was changed to the same RPMI-based medium and supplements except for the replacement of FBS with 2% KOSR (Life Technologies) and the incubation was maintained for another 2 days.
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7

Directed Mesoderm Induction Protocol

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DM induction was carried out by replacing the SM induction medium with DM induction medium [5 μM CHIR99021 and 10 ng/ml BMP4 (R&D Systems) in CDM basal medium]. DM induction was performed for 3 days, and the induction medium was changed on day 2. The composition of the DM induction medium was determined by mini-screening of 25 conditions using various concentrations of CHIR99021, IWR1 (Cayman Chemical), BMP4 (R&D Systems) and DMH1 (Tocris).
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8

BMP4 Signaling in C2C12 Cells

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C2C12 cells were plated into 6-well plates (2.5×105 cells/well) and cultured overnight at 37°C. Cells were transfected with V5- or HA-tagged ACVR1 constructs as described above. For stimulation with BMP4, cells were serum-starved (0.5% FBS in DMEM) for 2 hours followed by treatment with 30ng/ml BMP4 (R&D Systems) for 1 hour. Cells were lysed in RIPA buffer (Sigma-Aldrich) supplemented with Halt Protease and Halt Phosphatase Inhibitor Cocktail (Pierce), and cleared by centrifugation. Protein concentrations of lysates were quantified by BCA Protein Kit (Thermo Scientific). Proteins were electrophoresed through 10% Tris-Glycine gels (Invitrogen), and transferred to nitrocellulose (Invitrogen). Membranes were blocked in 5% milk in 1xTBS (BioRad; #1706435) and incubated overnight at 4°C with primary antibodies against phospho-Smad1/5/8 (Cell Signaling Technology, #9511), V5 (Invitrogen R960-25), HA (Sigma Aldrich, #H6908) or β-actin (Cell Signaling Technology, #4967) followed by detection using an anti-rabbit (Cell Signaling Technology, #7074) or anti-mouse (Santa Cruz, #H2208) HRP-conjugated secondary antibody. Membranes were incubated with HRP substrate (LI-COR) and chemiluminescence was detected and quantified with a C-DiGit Blot Scanner (LI-COR).
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9

Directed Differentiation of Hematopoietic Progenitors

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Cells cultured in Matrigel (BD) and mTeSR medium (Stem Cell Technologies) were incubated in medium supplemented with 10 μM ROCK inhibitor (Millipore) for 1 h at 37°C. The cells were harvested with EDTA/PBS treatment (0.5 mM EDTA, Sigma-Aldrich) for 4 minutes at room temperature. Cell clumps were rinsed with mTeSR medium containing polyvinyl alcohol (Sigma-Aldrich) and transferred to ultra-low attachment plates (Corning Costar) to form embryoid bodies (EBs). On the following day, the medium was changed for STEMdiff APEL basal medium (Stem Cell Technologies) supplemented with 30 ng/mL VEGF, 30 ng/mL BMP4, 40 ng/mL SCF, and 50 ng/mL Activin A (all from R&D) for four days. Then, EBs were exposed for nine days to basal medium containing 300 ng/mL SCF, 300 ng/mL FLT3L, 10 ng/mL IL-3, 10 ng/mL IL-6, 50 ng/mL G-CSF, and 25 ng/mL BMP4 (all from R&D). At the end of day 13, EBs were collected and dissociated in single cells using 0.05% trypsin. Fifty thousand cells were seeded in methylcellulose medium with recombinant cytokines (MethoCult H4435) into 35 mm dishes. Fourteen days later, the grown colony-forming units (CFUs) were identified according to the standard morphological criteria and counted. The differentiation protocol was adapted from Ng et al. (2008) (link) and Chadwick et al. (2003) (link).
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10

Tumor-Initiating Cell Differentiation

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A previously established protocol for differentiating tumor-initiating cells was followed (10 (link)). Briefly, 5% calf serum was added to basal culture media that lacked growth factors. After 7–10 days, expression of lineage markers was assayed using immunofluorescence. For BMP-4 induced differentiation (Fig. S2), TICs were incubated with BMP-4 (100 ng/ml, R&D Systems) in the absence of growth factors (bFGF, EGF, heparin) in adherent culture for 48h (28 (link)).
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