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33 protocols using anti lamp2

1

Immunofluorescence Staining of PtdIns(3,4,5)P3

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Cells were fixed with 4% PFA (09154-85, Nacalai Tesque) for 30 min at room temperature. After permeabilization with 0.1% Triton X-100 solution for 10 min and washing in tris-buffered saline (TBS), cells were blocked with 0.2% gelatin-TBS for 30 min and subsequently with primary antibodies, purified anti-PtdIns (3,4,5) P3 IgG (1:200) (Z-P345B, Echelon Biosciences), anti-Synj1 (1:500) (HPA011916, ATL ATLAS antibodies AB), anti-LAMP1 (1:100) (#9091, Cell Signaling Technology), and anti-LAMP-2 (sc-18822, Santa Cruz) overnight at 4 °C. After three washes in TBS, the cells were incubated with fluorescein AffiniPure donkey anti-mouse antibody (715-095-150, Jackson ImmunoResearch), Cy™3 AffiniPure donkey anti-Rabbit antibody (111-165-003, Jackson ImmunoResearch), or Alexa Fluor 647 donkey anti-rabbit antibody (A31573, Molecular Probes) (1:1000) for 1 h at room temperature. After washing in TBS, the cells were counterstained with Hoechst (H21486, Thermo Scientific) and observed microscopically using SpinSR10 (Olympus, Tokyo, Japan).
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2

Western Blot Analysis of Autophagy Markers

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The obtained cell proteins were resolved by SDS-PAGE. After transferring, the membranes were blocked in 5% defatted milk (Bio-Rad) and then incubated with the primary antibodies: anti-LAMP2 (1:500 dilution, Santa Cruz Biotechnology, United States), Cathepsin D (1:1,000 dilution, Cell Signaling Technology, United States), LC3B (1:1,000 dilution, Cell Signaling Technology, United States), ATG5 (1:1,000 dilution, Proteintech, United States) and β-actin (1:10,000 dilution, Multisciences, China) overnight at 4°C, followed by HRP-conjugated secondary antibodies (Multisciences, China). Immunoblots were visualized by ECL substrate (Biosharp) and Bio-Rad Image Lab software.
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3

Age-Dependent Regulation of Vesicular Trafficking Proteins in Entorhinal Cortex

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Mice were anesthetized with ketamine (50 g/kg)/xylazine (5 mg/kg) and brains were rapidly removed over ice. Brains of 12 (n=4) and 24 (n=5) month old mice were snap frozen and stored at −80°C before biochemical analyses. Entorhinal cortices were dissected out from fresh brains of 12 (n=4) and 24 (n=4) month old mice and stored at −80°C. Western blot immunolabeling was performed as previously described52 (link). Primary antibodies used were: anti-LAMP-2 (1:1000), anti-Rab4a (1:1000; Santa Cruz Biotechnology, Santa Cruz, CA; Cat # SC-312), anti-Rab5a (1:1000), anti-Rab7 (1:1000; Sigma, St. Louis, MO; Cat # R8779), anti-Rabaptin5 (1:1000; Santa Cruz Biotechnology, Santa Cruz, CA; Cat # SC-6162), anti-LC3 (1:1000), anti-Cat D (1:1000), C1/6.1 (1:1000)48 (link), anti-mTOR and anti-AKT (phosphorylated and total protein) (1:1000, Cell Signaling Technology, Inc., Danvers, MA; Cat # 2983S and Cat # 9272S respectively), anti-α-synuclein (1:1000; Sigma, St. Louis, MO; Cat # S3062), and anti-β-tubulin (1:10000; Sigma, St. Louis, MO; Cat # T8535). Secondary antibodies used were: HRP conjugated anti-rabbit and mouse antibodies (1:5000; GE Healthcare, Pittsburgh, PA). The protein bands were scanned, optical density was calculated using the Image J, and the ratio of protein intensity to β-tubulin in the same lane was calculated. Western blot analyses were repeated 3 times.
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4

Platelet Morphology Assessment via Microscopy

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Platelet morphology in the Spanish index was assessed by light and immunofluorescence microscopy on blood smears as reported [46 (link),47 (link)]. Particularly, the expression of three α-granule markers (i.e., thrombospondin, von Willebrand factor (vWF), and P-selectin), three dense granule markers (i.e., markers LAMP-1, LAMP-2, and CD63), and the cytoskeletal protein ß-tubulin was determined. The following primary antibodies were used: anti-thrombospondin (ab85762, Abcam, Cambridge, UK); anti-P-selectin (555522, BD Biosciences, San Jose, CA, USA); anti-vWF (A0082, Dako, Waldbronn, Germany); anti-LAMP-1 (sc18821, Santa Cruz Biotechnology, Heidelberg, Germany); anti-LAMP-2 (sc18822, Santa Cruz, CA, USA); anti-CD63 (558019, BD Biosciences); anti-β1-tubulin (T4026, Merck Life Science, Darmstadt, Germany). As secondary antibodies, Alexa Fluor 568 (A11011, Invitrogen, Thermo Fisher Scientific) and Alexa Fluor 488 (A11001, Invitrogen, Thermo Fisher Scientific, Dreieich, Germany) were used. Each marker was eventually assessed by standard immunofluorescence microscopy using the Olympus BX40 microscope system (Olympus, Hamburg, Germany). Blood smears from healthy controls were stained and analyzed in parallel.
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5

Western Blot Analysis of Cellular Proteins

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Cell pellets were resuspended in Laemmli sample buffer (BioRad), and Western blots were performed as described previously [45 (link)]. The membranes were incubated with the following primary antibodies: anti-lamin A/C (Thermo Fisher, 1/5000), anti-prelamin A (Santa Cruz, 1/3000), anti-53BP1 (Bethyl, 1/3000), anti-Rad51 (NBP2-32622, Novus Biological, 1/1000), anti-Lamp2 (Santa Cruz, 1/1000), anti-p62 (NovusBio, 1/3000), anti-LC3B (Sigma-Aldrich, 1/10000), and anti-β-actin (Sigma-Aldrich, 1/10000). Afterwards, the membranes were incubated with a corresponding secondary antibody coupled to horseradish peroxidase (Jackson ImmunoResearch Laboratories). Proteins were visualized with a chemiluminescence detection system (ECL substrate; BioRad) and signals were analyzed using the IMAGE LAB software (BioRad). Protein signals were quantified by normalizing to β-actin, as indicated.
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6

Diverse Immunoblotting and Immunofluorescence Assays

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Anti-GABA (1:400 diluted; A2052), anti-LC3A/B (1:1000 diluted for immunoblotting; L8918), and anti-p62 (1:1000 diluted; P0067) were purchased from Sigma-Aldrich. Anti-LAMP2 (1:400 diluted; sc-5571, sc-18822) was purchased from Santa Cruz Biotechnology. Anti-GABARAPL1 (1:400 diluted; ab86497) and anti-β-tubulin (1:1000 diluted; ab6046) were purchased from Abcam. anti-LC3A/B (1:400 diluted for immunofluorescence; PM036) was purchased from MBL International. Anti-LC3B (1:100 diluted for flow cytometry; 2775s), anti-phospho-AMPKA (1:1000 diluted; 2535s), anti-phospho-ACACA/B (1:1000 diluted; 3661s) were purchased from Cell Signaling. Alexa Fluor 488-conjugated anti-rabbit IgG (1:400 diluted; A17041), Alexa Fluor 594-conjugated anti-rabbit IgG (1:400 diluted; A21207), and Alexa Fluor 568-conjugated anti-mouse IgG (1:400 diluted; A11004) were purchased from Invitrogen. Anti-GAD65 (1:400 diluted; PA5-22260) was purchased from Thermo Fisher Scientific. Muscimol (M1523), isoguvacine hydrochloride (G002), GABA (A2129), BIC (B7686), 4′-6-diamidino-2-phenylindole dihydrochloride (DAPI; D9542), PTX (M7514), ATP (A26209), and PTZ (P6500) were purchased from Sigma-Aldrich. BAPTA-AM (196419) was purchased from Calbiochem.
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7

Immunocytochemical and Western Blot Analysis

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Immunocytochemistry and Western blot analysis were performed as we described before.27, 28 The following primary antibodies were used: anti‐OCT4 (1:200; Santa Cruz), anti‐SOX2 (1:200; Millipore), anti‐NANOG (1:200; R&D Systems), anti‐SSEA‐4 (1:100; Developmental Studies Hybridoma Bank), anti‐TRA‐1‐81 (1:100; Chemicon), Tuj1 anti‐tubulin beta III isoform (1:200; Millipore), anti‐SMA (1:100; DAKO); anti‐AFP (1:100; DAKO), anti‐Nestin (1:200; R&D Systems), anti‐Musashi (1:200; Millipore), anti‐Map2 (1:200; Millipore), anti‐TBR1 (1:100; Abcam), anti‐CTIP2 (1:100; Abcam), Aβ42 anti‐β‐Amyloid42 (1:500; Calbiochem), AT8 anti‐p‐Tau (1:1000; Thermo Fisher Scientific) and anti‐LC3B (1:500; Cell Signaling), Tau5 anti‐tau (1:1000; Thermo Fisher Scientific), anti‐Mfn1 (1:1000; Abcam), anti‐Mfn2 (1:1000; Cell Signaling), anti‐DRP1 (1:1000; Cell Signaling), anti‐Fis1 (1:1000; Santa Cruz), anti‐Ub (1:4000; Santa Cruz), anti‐LAMP2 (1:1000; Santa Cruz), anti‐Beclin1 (1:1000; Cell Signaling), p62 anti‐SQSTM1 (1:1000; Santa Cruz) and anti‐β‐actin (1:10 000; Santa Cruz).
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8

Antibody Validation for Western Blotting

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anti-FLAG M2 (Sigma, F1804), anti-HA.11 (BioLegend, 901501), anti-myc (Santa Cruz Biotechnology, sc-40), anti-GST (Yeasen, 30902ES60), anti-α-tubulin (Yeasen, 30304ES60), anti-β-actin (Yeasen, 30101ES60), anti-GAPDH (Immunoway, YM3029), anti-CD31 (Abcam, ab28364), anti-VEGF (Novus Biologicals, NB100-664), anti-PCNA (Servicebrio, GB11010), anti-ubiquitin (Santa Cruz Biotechnology, sc-8017), anti-GFP (Yeasen, 31002ES60), anti-LUB9 (Lifesensors, AB130), anti-HIF1α (Novus, NB100-479; Abcam, ab228649), anti-HIF1β (Cell Signaling technology, #5537), anti-Otulin (Abcam, ab211328), anti-HOIP (Abcam, ab46322; R&D systems, MAB8039), anti-HOIL-1L (Millipore, MABC576), anti-Sharpin (Proteintech, 14626-1-AP), anti-LAMP2 (Santa Cruz Biotechnology, sc-18822), anti-Lamin B1 (Zenbio, R24825), normal mouse immunoglobulin (IgG) 1 (Santa Cruz Biotechnology, sc-3877), anti-mouse IgG(H + L) (Jackson ImmunoResearch, 151383), and anti-rabbit IgG(H + L) (Jackson ImmunoResearch, 145472).
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9

Comprehensive Antibody Collection for Cell Signaling

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Antibodies used in this study included anti-STING (13647; Cell Signaling Technology), anti-Flag M2 (F3165; Sigma-Aldrich), anti-HA (H3663; Sigma-Aldrich), anti-EGFP (GL-8; Clontech), anti-LC3 (7543; Sigma-Aldrich), anti-p62 (PM045; MBL), anti-STX17 (HPA001204; Sigma-Aldrich), anti-SNAP29 antibody (111303, SYSY, or sc-135564; Santa Cruz Biotechnology), anti-LAMP1(L1418; Sigma-Aldrich), anti-LAMP2 (sc-18822; Santa Cruz or L0668; Sigma-Aldrich), anti-Myc (9E10, DSHB), anti-WIPI2 (ab105459; Abcam), anti-FIP200 (17250; ProteinTech), anti-ATG16L (PM040; MBL), anti-α-Tubulin (E7; DSHB), anti-VAMP8 (ab76021; Abcam), anti-GABARAP (ab109364; Abcam), anti-AMPK (2532; Cell Signaling Technology), anti-p-AMPK T172 (2535; Cell Signaling Technology), anti-TBC1D1(66433; Cell Signaling Technology), anti-p-TBC1D1 Ser237(07-2268; Sigma-Aldrich), anti-Raptor (2280; Cell Signaling Technology), anti-p-Raptor Ser792 (2083; Cell Signaling Technology), anti-TSC2 (4308; Cell Signaling Technology), anti-p-TSC2 Ser1387 (5584; Cell Signaling Technology), anti-ACC (3662; Cell Signaling Technology), anti-p-ACC Ser79 (3661; Cell Signaling Technology), anti-Glut4 (GT-41-A; Alpha diagnostic international), anti-Laminin2 (L0663; Sigma-Aldrich), anti-CD36 (80080; Abcam), anti-Dystrophin (15277; Abcam), and LysoTracker (ENZ-51005; Enzo).
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10

Immunofluorescence analysis of HIV-1 proteins and cellular markers

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For immunofluorescence experiments, PBMC were incubated with the following antibodies: human monoclonal anti-HIV-1 gp41 (1:25, kindly provided by Dr Marie-Lise Gougeon, Paris); human monoclonal anti-gp120 (1:200, kindly provided by Dr Jean-Luc Perfettini, Paris); rabbit polyclonal anti-LC3B (1:200, Sigma-Aldrich, L7543); mouse monoclonal anti-LAMP2 (1:100, Santa Cruz Biotechnology, sc-18822); rabbit polyclonal anti-LAMP1 (1:100, abcam, ab24170); mouse monoclonal anti-CD63 (1:200, abcam, ab8219); mouse monoclonal anti-CD81 (1:200, abcam, ab59477). Sections were thoroughly rinsed with PBS, then incubated for 1 h at RT with 1:400 Alexa488 conjugated goat anti-human IgG (Molecular Probes MP 11013), 1:400 Alexa594 conjugated goat anti-mouse IgG (Invitrogen, Life Technologies, A-11020) or 1:400 Alexa594 conjugated goat anti-rabbit IgG (Invitrogen, Life Technologies, A-11037), 1:400 donkey anti-mouse AlexaFluor 647 (Jackson Immunoresearch, 715-606-151). Controls were performed by omitting the primary antibodies. Slides were observed and photographed in a Leica TCS SP2 confocal microscope (Leica Microsystems GmgH, Ernst-Leitz-trasse 17-37 35578 Wetzlar Germany).
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