The largest database of trusted experimental protocols

14 protocols using p axl

1

Comprehensive Protein Expression Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole-cell lysates were prepared as previously described55 (link). Antibodies specific for p53 (1:2000, sc-126), p-EGFR (1:1000, Tyr1173, sc-101668), EGFR (1:2000, sc-373749), p-Erk (1:1000, Thr202/Tyr204, sc-16982), Erk (1:3000, sc-94), Akt (1:3000, sc-5298), AXL (1:1000, sc-1096), E-cadherin (1:1000, sc-71008), EpCAM (1:1000, sc-71059), desmoplakin (1:1000, sc-390975), cytokeratin-8/18 (1:1000, sc-70939) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA); those for p-Akt (1:1000, Ser473, #4060), β-catenin (1:1000, #8480), p-AXL (1:1000, #4060), and vimentin (1:1000, #5741) were obtained from Cell Signaling Technology (Beverly, MA, USA). To assess the level of p-AXL, lysates were immunoprecipitated with an anti-AXL antibody and immunoblotted with an anti-phosphotyrosine (p-Tyr, 1:1000, sc-7020, Santa Cruz) antibody. The immunoblotting is representative of three independent experiments.
+ Open protocol
+ Expand
2

Inhibition of AXL and EGFR Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gefitinib (CAS No. HY-50895) and Osimertinib (AZD-9291, CAS No. HY-15772) were purchased from MedChemExpress (NJ, USA). Cycloheximide (CAS No. 66-81-9) was purchased from A.G. Scientific (CA, USA). Yuanhuadine (YD; purity >98.5%) was isolated from a CHCl3-soluble fraction of the flowers of Daphne genkwa, as described previously22 (link). All chemicals were dissolved in DMSO for in vitro experiments.
Antibodies against C-terminal AXL (sc-1096), EGFR (sc-03), p-ERK (sc-7383), ERK (sc-94), MET (sc-10), β-actin (sc-47778) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA, USA). p-AXL (#5724), p-EGFR (#2234), p-MET (#3077), p-Akt (#9271), Akt (#9272), p-p70S6 Kinase (#9205), p70S6 Kinase (#9202), p-SAPK/JNK (#9091), SAPK/JNK (#9252), and snail (#3879) were obtained from Cell Signaling Technology (Danvers, MA, USA).
+ Open protocol
+ Expand
3

Western Blot Analysis of AXL and AKT

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein lysates were prepared from cultured cells or frozen tumors using a 9M Urea, 0.075 M Tris buffer (pH 7.6) and quantified using the Bradford assay. 50-100μg of protein was subjected to reducing SDS/PAGE by standard methods. Western blots were incubated with primary antibodies against AXL (R&D Systems), P-AXL (Cell Signaling), GAS-6 (R&D), AKT (Cell Signaling), and phospho-AKT (Cell Signaling) as needed. To confirm equal protein loading, blots were probed with antibodies specific for β-actin (Sigma Aldrich), HSP70 (Thermo Fisher), or Vinculin (BD Pharmingen).
+ Open protocol
+ Expand
4

Comparative Analysis of EGFR Inhibitors

Check if the same lab product or an alternative is used in the 5 most similar protocols
Gefitinib, erlotinib, lapatinib and R428 were purchased from Selleck Chemicals (Houston, TX, USA). Propidium iodide and RNase A were purchased from Sigma-Aldrich (St Louis, MO, USA). The primary antibodies used were as follows: E1A (ab-52523; Abcam), EGFR (sc-03; Santa Cruz Technology), AXL (#4566; Cell Signaling Technology), p-AXL (#5724; Cell Signaling Technology), and α-Tubulin (T-5168; Sigma). All secondary antibodies were purchased from Jackson ImmunoResearch Laboratories, Inc. (West Grove, PA, USA).
+ Open protocol
+ Expand
5

Western Blot Analysis of PI3K/Akt/mTOR Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were lysed in lysis buffer (Thermo Fisher Scientific, Inc.) containing phosphatase inhibitors (Thermo Fisher Scientific Inc.) and PMSF (Thermo Fisher Scientific Inc.). The proteins were loaded on an 10% SDS gel, resolved using SDS-PAGE, and transferred to PVDF membranes (MilliporeSigma). Subsequently, the membranes were blocked with 5% skimmed milk, incubated with primary antibodies against pPI3K (cat. no. ab182651; 1:200; Abcam), PI3K (cat. no. ab191606; 1:1,000; Abcam), pAxl (cat. no. 96453; 1:1,000; Cell Signaling Technology, Inc.), Axl (cat. no. ab215205; 1:1,000; Abcam), pAkt (cat. no. ab81283; 1:2,000; Abcam), Akt (cat. no. ab38499; 1:1,000; Abcam), mTOR (cat. no. ab2732; 1:2,000; Abcam), PTEN (cat. no. ab32199; 1:5,000; Abcam), or GAPDH (cat. no. ab8245; 1:2,000; Abcam), followed by incubation with the relevant horseradish peroxidase-conjugated secondary antibody (anti-Rabbit; cat. no. ab205718; anti-Mouse: cat. no. ab6789; Abcam). GAPDH was used as the internal control. Signals were visualized using a Laser Holographic imager (Azure Biosystems).
+ Open protocol
+ Expand
6

Comprehensive Reagent and Antibody Sources

Check if the same lab product or an alternative is used in the 5 most similar protocols
Reagents were obtained from the following sources: ADI-PEG20 (specific activity, 5∼10 IU/mg) from Polaris Pharmaceuticals Inc. (San Diego, CA); sulforhodamine B (SRB), Ly294002 from Sigma–Aldrich (St. Louis, MO); perifosine, PLX4720 and foretinib (XL880 or GSK1363089) from Selleck Lab (Houston, TX); PI-103 from Echelon Biosciences (Salt Lake City, UT); gefitinib and lapatinib from LC laboratories (Woburn. MA); JQ1 from AdooQ Bioscience (Irvine, CA).
Antibodies were obtained from the following sources: rabbit antibodies for hEGFR, p-EGFR, p-Axl, EphA2(ser897), and EphA2(Y588) from Cell Signaling (Danvers, MA); rabbit anti-Axl, p-Axl, EGFR, P-EGFR, hErbB2, p-hErbB2, HGF-1R, hIGF, EphA1, and α-tubulin antibodies were from R&D Laboratories (Minneapolis, MN). Polyclonal antiphosphotyrosine (p-Tyr) antibody from Thermo Fisher (Grand Island, NY); rabbit anti-EphA2 antibody from Bethyl laboratory (Houston, TX); anti-ASS1 antibody from Polaries.
Small interfering RNA (siRNA) for c-Myc and AXL has been published [20 (link)]; EphA2 (Cat. No. SASI_Hs01-00222676 and SASI-Hs01-000265), RSK (SASI_Hs01_00070213 and SASI_Hs02_00305126) were all obtained from Sigma-Aldrich (St. Louis, MD).
+ Open protocol
+ Expand
7

Protein Expression and Phosphorylation Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell lysates or conditioned media that was concentrated using Amicon Ultra 0.5 10K Centrifugal Filters (EMD Millipore, Billerica, MA, USA), were prepared using standard protocols. The following antibodies were used: AXL (#4566), pAXL (#5724), ALK (#3333), pALK (#3341), AKT (#4691), pAKT (#9271), ERK (#4695), pERK (#4377), VIM (#5741), CDH1 (#3195), tubulin (#2128) and actin (#4967) from Cell Signaling Technology (Danvers, MA, USA); GAS6 (sc-376087), HSP90 (sc-59577) and phosphotyrosine (sc-81529) from Santa Cruz Biotechnology (Santa Cruz, CA, USA); Flag (#F3165) from Sigma-Aldrich (Saint Louis, MO, USA); and AXL antibody for immunocytochemistry from R&D Systems (Minneapolis, MN, USA, #AF154).
+ Open protocol
+ Expand
8

Extraction and Analysis of Protein Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted with SDS lysis buffer (Beyotime Biotechnology). Nuclear and cytoplasmic proteins were prepared as described previously.15 Cells for IP were lysed with RIPA lysis buffer (Beyotime Biotechnology). Protein A/G Magnetic Beads were purchased from Bimake. Antibodies are listed as follows: YAP (#14074), p‐YAP (Ser127) (#13008), AXL (#8661), p‐AXL (Tyr702) (#5724), STAT3 (#9139), p‐STAT3 (Tyr705) (#9145), AKT (#4691), p‐AKT (Ser473) (#4060), ERK (#4695), p‐ERK1/2 (Thr202/Tyr204) (#4370), MMP2 (#40994), MMP9 (#13667), MST1 (#3682), p‐MST1/2 (Thr183/Thr180) (#49332), LATS1 (#3477), p‐LATS1 (Thr1079) (#8654), LATS2 (#5888), MOB1 (#13730), p‐MOB1 (Thr35) (#8699) (Cell Signaling Technology, CST), MST2 (12097‐1‐AP) (Proteintech).
+ Open protocol
+ Expand
9

Quantifying Protein Phosphorylation Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as described previously8 (link) using primary antibodies for p-AXL (Tyr702), t-AXL, p-EGFR (Tyr1086), β-actin (13E5), p-Akt (Ser473), t-Akt, p-Erk1/2 (Thr202/Tyr204), t-ERK1/2 (1:1000; Cell Signaling Technology), and t-EGFR (1:1000; R&D Systems).
+ Open protocol
+ Expand
10

Liver Histochemistry and Immunohistochemistry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Liver sections were stained with hematoxylin and eosin. Immunohistochemical staining for 4-Hydroxynonenal (4-HNE) (R&D Systems) and phosphorylation AXL (p-AXL) (Cell Signaling Technology) was performed on the paraffin sections.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!