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Benzamidine hydrochloride hydrate

Manufactured by Merck Group
Sourced in United States

Benzamidine hydrochloride hydrate is a chemical compound used as a laboratory reagent. It is a white crystalline solid that is soluble in water and other polar solvents. The primary function of benzamidine hydrochloride hydrate is to serve as a biochemical tool in various research and analytical applications.

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9 protocols using benzamidine hydrochloride hydrate

1

Quantitative Proteomic Sample Preparation

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N-Ethylmaleimide, 6-aminocaproic acid, benzamidine hydrochloride hydrate, dithiothreitol (DTT), iodoacetamide, ammonium bicarbonate (AMBIC), formic acid, and HPLC grade acetonitrile and Solvents A (0.1% formic acid) and B (0.1% formic acid in acetonitrile) for liquid chromatography-mass spectrometry (LC-MS) were from Sigma–Aldrich (St. Louis MO, USA). Guanidine hydrochloride (GdnHCl) and anhydrous sodium acetate (NaAc) were from Merck (Darmstadt, Germany). Trypsin Gold (MS grade) was purchased from Promega (Madison WI, USA). The Pierce Quantitative Colorimetric Peptide Assay and SOLAμ™ Solid Phase Extraction (SPE) HRP (horse radish peroxidase) 2mg/1 ml 96-well plates were from Thermo Fisher Scientific (Rockford IL, USA), and Nanosep® 30K Omega Centrifugal Devices were from Pall Life Sciences (Ann Arbor MI, USA).
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2

Recombinant Protein Labeling and Purification

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The following reagents are required:
BL21(DE3)pLys Escherichia coli bacteria (Agilent Technologies, cat. no. 230134), pGEX-4T3 vector (GE Life Sciences, cat. no. 28-9545-52), isopropyl ß-d-1-thiogalactopyranoside (IPTG; Sigma Aldrich, cat. no. I5502), phosphate buffered saline (PBS; Sigma Aldrich, cat. no. P4417), Tween® 20 (Sigma Aldrich, cat. no. P9416), phenylmethylsulfonyl fluoride (PMSF; Fluka-Sigma Aldrich, cat. no. 78830), benzamidine hydrochloride hydrate (Fluka-Sigma Aldrich, cat. no. 12073), glutathione-agarose (Sigma Aldrich, cat. no. G4510), human thrombin (Sigma Aldrich, cat. no. T6759), Bradford protein assay (Bio-Rad, cat. no. 500-0006), tris-(2-carboxyethyl)phosphine hydrochloride (TCEP; Thermo Scientific, cat. no. 20490), dimethyl sulfoxide (DMSO; Sigma Aldrich, cat. no. 41648), AlexaFluor555C2 maleimide (Life Technologies, cat. no. A-20346), AlexaFluor647 antibody labelling kit (Life Technologies, cat. no. A-20186), recombinant human BDNF (50 ng/μl in distilled water; Peprotech, cat. no. 450-02), isoflurane (National Veterinary Services, UK), 70% ethanol solution (v/v in distilled water), saline (0.9% NaCl w/v).
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3

Specimen Preparation and Tissue Processing

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Specimens were killed by an overdose of tricaine methanesulfonate (0.5 g·L−1) and samples from the various organs were taken for the different experimental procedures. For immunohistochemistry, samples were fixed in 0.2 mol/L cacodylate buffer, 3.2% paraformaldehyde, 0.3% glutaraldehyde for 6 h, transferred to 50% ethanol for 6 h, and stored in 70% ethanol until further processing as described in Tresguerres et al. (2005). For western blot analysis, gill samples were flash frozen in liquid nitrogen and stored at −80°C. For nuclei isolation, gill and rectal gland samples were placed ice‐cold shark saline (280 mmol/L NaCl, 6 mmol/L KCl, 5 mmol/L NaHCO3, 3 mmol/L MgCl2, 0.5 mmol/L NaSO4, 1 mmol/L Na2HPO4, 350 mmol/L urea, 70 mmol/L trimethylamine N‐oxide, 5 mmol/L glucose, 1:100 protease inhibitor cocktail [1 mmol/L dithiothreitol, 1 mmol/L phenylmethylsulfonyl fluoride, 10 mmol/L benzamidine hydrochloride hydrate; SigmaAldrich], pH 7.7) and processed immediately.
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4

Protein Identification and Quantification

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N-Ethylmaleimide, 6-aminocaproic acid, benzamidine hydrochloride hydrate, dithiothreitol (DTT), iodoacetamide, ammonium bicarbonate (AMBIC), formic acid, HPLC grade acetonitrile and A (0.1% formic acid in water) and B (0.1% formic acid in acetonitrile) solutions for LC-MS were purchased from Sigma-Aldrich (St. Louis, USA). Guanidine hydrochloride (GdnHCl) and anhydrous sodium acetate (NaAc) were purchased from Merck (Darmstadt, Germany). Trypsin gold MS grade was purchased from Promega (Madison, WI). The water used in this study was purified using a MilliQ apparatus (Millipore, Billerica, MA).
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5

Protease Inhibitor Screening in Insect Midgut

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Selected protease inhibitors were added to digestion reactions in order to define the types of proteases present in midgut fluids. Bestatin and chymostatin (Roche Diagnostics, Indianapolis, IN, USA) were resuspended in methanol and DMSO respectively according to the manufacturer’s recommendations and added to reactions at final concentrations of 130 µM and 100 µM respectively. benzamidine hydrochloride hydrate (Sigma-Aldrich) was resuspended in 50 mM Tris-HCl (pH 8.0) and added to reactions at a final concentration of 5 mM. For insect bioassays, benzamidine was added directly to the prepared proteins in 50 mM Tris-HCl (pH 8.0) at final concentrations of 9 mM, 3 mM, 1 mM and 0.3 mM relative to the diet volume of 1.5 mL per well.
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6

Cardiac Membrane Vesicle Isolation

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All steps of the SR vesicle preparation were performed on ice and/or at 4°C. For lipid bilayer experiments, five to seven hearts were homogenised in cardiac homogenising buffer (CHB, containing, in mM: sucrose 290, imidazole 10 and NaN3 3, pH 6.9). The homogenate was then centrifuged at 12,000 g for 20 min, then the pellet discarded and the supernatant centrifuged at 43,000 g for 2 h. The pellet was resuspended in Buffer A (CHB plus 649 mM KCl) and centrifuged at 46,000 g for 1.5 h. This pellet was re-suspended in 125 µl per g of mouse heart (∼5 hearts) of buffer A plus protease inhibitor mixture and stored in 8 μl aliquots at −80°C for use in lipid bilayer experiments. All individual protease inhibitors were obtained from Sigma-Aldrich and were added to the final suspension at the following final concentrations: benzamidine hydrochloride hydrate (catalogue #B6506), 1.0 mM; pepstatin A (catalogue #P4265), 2.1 µM; leupeptin (catalogue #L2884), 1 µM; AEBSF/Pefabloc SC (catalogue #76307), 0.5 mM; calpain inhibitor I –(catalogue #A6185), 3 µM; calpain inhibitor II (catalogue no. A6060), 3 µM.
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7

Comparative Analysis of Articular Cartilage Across Species

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Equine stifles (2 joints from a 4-year-old Thoroughbred mare) were obtained immediately following euthanasia (University of Pennsylvania New Bolton Center, Kennett Square, PA). Bovine and ovine stifles (n = 2 & 3, respectively), and a porcine hindlimb were obtained from a local abattoir (Bowman’s Butcher Shop, Churchville, MD). A caprine stifle was sourced from a local grocer (Roohani-Lasani Halal Grocery, Newark, DE). Osteochondral explants were extracted with a coring bit from the centerline of each femoral condyle and the articular surface of the porcine femoral head and tibiotalar joint. Explant diameters and locations were chosen to obtain cSCA geometries exhibiting convex curvature (Fig. 1A, Table 1). Explants were rinsed with 1X phosphate buffered saline (PBS), the underlying bone was trimmed to ~15 mm in height using an ISOMET low-speed saw (Buehler, Lake Bluff, IL), and the principal in vivo sliding direction was indicated on each explant. After extraction, explants were stored in a PBS + protease inhibitor solution (5 mM EDTA + 5 mM benzamidine hydrochloride hydrate, Sigma-Aldrich, St. Louis, MO) at 4°C for no more than 48 hours prior to testing.
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8

Quantitative Proteomic Sample Preparation

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N-Ethylmaleimide, 6-aminocaproic acid, benzamidine hydrochloride hydrate, dithiothreitol (DTT), iodoacetamide, ammonium bicarbonate (AMBIC), formic acid, and high-performance liquid chromatography (HPLC) grade acetonitrile and Solvents A (0.1% formic acid in water) and B (0.1% formic acid in acetonitrile) for LC-MS were purchased from Sigma-Aldrich (St. Louis). Guanidine hydrochloride (GdnHCl) and anhydrous sodium acetate (NaAc) were purchased from Merck (Darmstadt, Germany). Trypsin Gold (MS grade) was purchased from Promega (Madison, WI). The water used in this study was purified using a MilliQ apparatus (Millipore, Billerica, MA). The Pierce Quantitative Colorimetric Peptide Assay was purchased from Thermo Fisher Scientific (Rockford) and Nanosep 30K Omega Centrifugal Devices were purchased from Pall Life Sciences (Ann Arbor). Reversed-phase C18 columns were purchased from Nest Group (Southborough, MA).
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9

Dual Contrast Agent Preparation Protocol

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The dual contrast agent was composed of CA4 + (5,5′‐(malonylbis(azanediyl))bis(N1,N3‐bis(2‐aminoethyl)‐2,4,6‐triiodoisophthalamide, q =  +4, M = 1,499.88 g/mol) and gadoteridol (Prohance®; Bracco International B. V., Amsterdam, Netherlands, q = 0, M = 558.69 g/mol) diluted with phosphate‐buffered saline (PBS). Two dual contrast agent immersion baths (for 2 and 72 h immersions) containing 5 mg I/ml and 10 mg Gd/ml were prepared. Inhibitors of proteolytic enzymes (5 mM ethyleneadiaminetetra‐acetic acid [EDTA; VWR International, Fontenay‐sous‐Bois, France] and 5 mM benzamidine hydrochloride hydrate [Sigma‐Aldrich Inc., St. Louis, MO]) were added to both immersion baths. Furthermore, penicillin–streptomycin–amphotericin B (antibiotic antimycotic solution: 100 units/ml penicillin, 100 µg/ml streptomycin, and 0.25 µg/ml amphotericin B, Sigma‐Aldrich Inc., St. Louis, MO) was added to the 72‐h immersion bath to minimize the sample degeneration. The osmolalities of the contrast agent mixtures were ~308 and ~297 mOsm/kg for the 2‐ and 72‐h immersion baths, respectively. The osmolalities of the contrast agents and PBS were measured with a freeze‐point osmometer (Halbmikro‐osmometer; GWB, Knauer & CO GmbH, Berlin, West‐Germany).
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