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6 protocols using axiocam 506 mono digital camera

1

Quantifying GFP Intensity in Reporter Strains

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Images used to quantify the GFP intensity in reporter strains were acquired with an Axio Imager.Z2 (Carl Zeiss, Germany), equipped with an Axiocam 506 mono digital camera (Carl Zeiss, Germany) and a Plan-Apochromat ×63/1.40 Oil DIC M27 objective. Images acquired with the same camera settings were processed with ZEN 2.5 (blue edition) microscope software in an identical manner. The signal intensity of a circular area of 150 pixels in diameter of 5–7 gut nuclei, from five animals per condition, was measured in ImageJ (23 (link)) and normalized to the background. In addition, 30–35 animals per strain were visually inspected for GFP expression. Statistical analysis on all of the experiments was performed using GraphPad Prism 6. The statistical methods used to calculate P-values are indicated in the figure legends.
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2

Imaging Transfected Lin37 Mutants in NIH3T3 Cells

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NIH3T3 cells were cultivated in 12-well plates on cover slides and transfected with 1.0 µl GeneJuice (EMD Millipore) and 300 ng plasmids expressing wild-type or mutant Lin37 fused to EGFP. Nuclei were stained for 10 min with Hoechst33342 and fluorescence was detected with Structured Illumination fluorescence microscopy, implemented by a Zeiss Apotom 2 (Carl Zeiss, Jena), a HXP120 fluorescence source, an Axiocam 506 mono digital camera, and the Zeiss Zen 2 Software.
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3

Immunofluorescence Analysis of PRMT5 and AKT

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Cells were treated with DMSO or GSK591 100 nM for 6 days and fixed with 4% paraformaldehyde for 20 min at room temperature, followed by permeabilization in ice-cold methanol for 10 min at −20 °C. Cells were then incubated in blocking buffer (5% BSA in PBS) for 1 h at room temperature, followed by incubation with anti-PRMT5 antibody, anti-Thr308-AKT, anti-Ser473-AKT, and total-AKT antibody at 4 °C overnight. Cells were washed three times for 5 min in PBS, then incubated for 2 h with Alexa Fluor 488-conjugated goat anti-rabbit secondary antibody against phospho-AKT and total-AKT, and Alexa Fluor 594-conjugated goat anti-mouse secondary antibody for PRMT5 (diluted 1:100 in blocking buffer) at room temperature. Finally, the nuclei were stained with DAPI (Sigma-Aldrich, cat#10236276001) for 30 min at room temperature before visualization. Cells were observed with ZEISS Axiocam 506 mono Digital Camera for Fluorescence Microscopy.
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4

Immunofluorescent Staining of Spleen

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Spleens were prepared for staining as previously described (34 (link)). Slides were stained with a primary antibody cocktail of CD169-FITC (MOMA-1; MCA947F; Bio Rad Laboratories; diluted 1:50), IgM-Biotin (II/41; 553436; BD Biosciences; diluted 1:35), and CD1d (1B1; 123551; BioLegend; diluted 1:200) in serum blocking buffer. Slides were secondary stained with anti-FITC-A488 (polyclonal; A11090; Life Technologies; diluted 1:100) and streptavidin-Hilyte555 (60666; Anaspec; diluted 1:20) in serum blocking buffer. Slides were imaged on a Zeiss Axio Observer Z1 at room temperature with acquisition software Zen v2.0.0.0 (Blue Edition) using tiling and z-stacking. Images were taken with a 20X Plan-Apochromat 20x/0.8 objective (420650–9901; Zeiss) and an Axiocam 506 mono digital camera (Zeiss). Image files were analyzed with ImageJ v1.52k (NIH).
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5

Apoptosis Detection in Embryo Sections

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Embryos were fixed in 4% PFA in PBS and infiltrated with 30% sucrose in PBS before being mounted in O.C.T. compound (Sakura Finetek USA Inc., Torrance, CA, USA). Sections (8 µm) were deposited on glass slides. Apoptotic cells were identified using the In Situ Cell Death Detection Kit, Fluorescein (Sigma-Aldrich Corp.) according to the manufacturer's instructions for the treatment of cryopreserved tissue sections. Sections were mounted in VECTASHIELDÒ Antifade Mounting Medium with DAPI (Vector Laboratories, Burlingame, CA, USA) and photographed using an Axiocam 506 mono digital camera (Carl Zeiss, Inc.) fitted onto an Axio Observed 7 fluorescence microscope (Carl Zeiss, Inc.). All positive signals were confirmed by DAPI staining. The percentage of TUNEL-positive cells was determined in three embryos per genotype per timepoint. Statistical analyses were performed with Prism 8 (GraphPad Software, Inc.) using a two-tailed, unpaired t-test with Welch's correction and Welch and Brown-Forsythe ANOVA tests.
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6

Quantifying Proliferating Cells in Embryos

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Sections (8 µm) of PFA-fixed, sucrose-infiltrated, O.C.T-mounted embryos were deposited on glass slides. Sections were fixed in 4% PFA in PBS with 0.1% Triton X-100 for 10 min and washed in PBS with 0.1% Triton-X 100. Sections were blocked for 1 hr in 5% normal donkey serum (Jackson ImmunoResearch Inc., West Grove, PA, USA) in PBS and incubated overnight at 4°C in anti-Ki67 primary antibody (1:300; Invitrogen, Carlsbad, CA, USA) in 1% normal donkey serum in PBS. After washing in PBS, sections were incubated in Alexa Fluor 488-conjugated donkey anti-rabbit secondary antibody (1:1,000; Invitrogen) diluted in 1% normal donkey serum in PBS with 2 μg/mL DAPI (Sigma-Aldrich Corp.) for 1 hr. Sections were mounted in Aqua Poly/Mount mounting medium (Polysciences, Inc., Warrington, PA, USA) and photographed using an Axiocam 506 mono digital camera (Carl Zeiss, Inc.) fitted onto an Axio Observer 7 fluorescence microscope (Carl Zeiss, Inc.). All positive signals were confirmed by DAPI staining. The percentage of Ki67-positive cells was determined in three embryos per genotype per timepoint. Statistical analyses were performed with Prism 8 (GraphPad Software, Inc.) using a two-tailed, unpaired t-test with Welch's correction and Welch and Brown-Forsythe ANOVA tests.
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