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52 protocols using skimmed milk

1

Protein Extraction and Western Blotting

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Protein extraction and blotting were performed as previously described (35 (link)). Proteins were extracted using RIPA buffer (Beyotime Institute of Biotechnology, Shanghai, China). Following the determination of protein concentration by a Protein Determination kit (cat. no. 704002; Cayman Chemical Company, Inc., Ann Arbor, MI, USA), equal amounts of protein samples (20 µg loaded per lane) were size-fractioned using SDS-PAGE (8% gels), electrotransferred onto a polyvinylidene difluoride membrane (Bio-Rad Laboratories, Inc., Hercules, CA, USA). The membranes were blocked with 5% skimmed milk (BD Biosciences), and then were hybridized with primary antibodies overnight at 4°C. After washing, the membranes were incubated with horseradish peroxidase conjugated secondary antibodies (1:10,000; cat. no. #W4011; Promega Corporation, Madison, WI, USA) for 2 h at room temperature. Finally, the enhanced chemiluminescent reagents (MILLIPORE, WBKLS0500) was used to treat the membranes. Densitometric quantification of bands was performed using the ImageJ software (version 1.50; National Institutes of Health, Bethesda, MD, USA). The following primary antibodies were used: Anti-GAPDH (cat. no. ab9485; 1:2,500), anti-IL-4 (cat. no. ab9811), anti-TNF-α (cat. no. ab6671) and anti-TGF-β1 (cat. no. ab92486; all 1:1,000; all Abcam).
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2

Protein Extraction and Western Blotting

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Cells were harvested and lysed in lysis buffer (20 mM Tris, pH 7.5, 150 mM NaCl1% Triton X-100, 2.5 mM sodium pyrophosphate, 1 mM Na3 (link)VO4 (link), 2 mM EDTA, 1mM PMSF and protease inhibitors (cat. no. HY-K0010; MedChemExpress)) as previously described.30 (link) Briefly, samples were loaded and separated by SDSPAGE, transferred to PVDF membranes (EMD Millipore) and blocked with 5% skimmed milk (BD Bioscience) at room temperature for 1 h. Subsequently, membranes were probed overnight at 4°C with the following primary antibodies: mouse anti-spastin (1:100, cat. no. sc-374068; Santa Cruz Biotechnology, Inc.), mouse anti-GAPDH (1:5,000, cat. no. ab8245; Abcam), rabbit anti-GFP (1:1,000, cat. no. ab290; Abcam), rabbit anti-mCherry (1:1,000, cat. no. ab125096; Abcam), mouse anti-Flag (1:1,000, cat. no. F1802; Sigma-Aldrich; Merck KGaA). HRP-conjugated secondary antibodies (cat. nos. AS038 and AS003; ABclonal Biotech Co, Ltd.) were used for protein signal detection with an enhanced chemiluminescence kit (Pierce; Thermo Fisher Scientific, Inc.).
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3

Western Blot Analysis of H9c2 Cardiomyocytes

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H9c2 cardiomyocytes were lysed in cold radioimmunoprecipitation assay lysis buffer (Fermentas; Thermo Fisher Scientific, Inc.). The concentration of the extracted protein was determined using a BCA Protein Quantification Kit (AS1086; Aspen Biotechnology). A total of 50 µg protein was loaded per lane. Proteins were then separated by 12% SDS-PAGE and transferred to polyvinylidene difluoride membranes (MilliporeSigma), followed by the addition of Tris-buffered saline and 0.1% Tween 20 (ASPEN) containing 5% skimmed milk (BD Biosciences) for 1 h at room temperature to block the membranes. Subsequently, the membranes were incubated with primary antibodies overnight at 4˚C (Table SI). Then, the membranes were then washed thoroughly three times with phosphate-buffered saline containing 0.1% Tween-20 (PBST) and then incubated with goat anti-rabbit secondary antibodies (1:10,000; Abcam) for 1 h at room temperature. After washing three times with PBST, chemiluminescence detection was performed with ECL chemiluminescence detection kit (ASPEN). Relative protein expression was analyzed with Image-Pro Plus software 6.0 (Media Cybernetics, Inc.) and normalized to GAPDH.
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4

CD8+ T Cell Protein Expression

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CD8+ T cells cultured alone and co‐cultured with exogenous Gal‐9 were collected and lysed in RIPA buffer supplemented with complete protease inhibitors and phosphatase inhibitors (Roche). Protein levels were quantified using a BCA Kit. Proteins were separated by electrophoresis on 4%‐12% precast gels (Bio‐Rad Laboratories) and transferred to nitrocellulose membranes (Millipore Corp). The membranes were blocked in 5% skimmed milk (BD Biosciences) or 5% bovine serum albumin (BSA) (Solarbio) and then incubated overnight at 4°C with primary antibodies against Notch1, p‐mTOR, p‐AKT, EOMES and GAPDH. After washing the membranes 3 times in TBST (Tris‐HCl containing NaCl and Tween 20), the membranes were incubated with the relevant horseradish peroxidase–conjugated secondary antibodies (1:5000 dilution, Cell Signaling Technology). A summary of the primary antibodies mentioned above is provided in Table 3. The reaction was detected using Super ECL Plus Detection Reagent. Protein levels were normalized to GAPDH.
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5

Western Blot Analysis of Protein Expression

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Cells were lysed in RIPA buffer, and total protein concentrations of cell lysate were measured via BCA assays (Thermo Fisher Scientific, Main St, MA, USA) according to the manufacturer's instructions. A certain amount of proteins were denatured, subjected to 10% ~ 12% SDS‐PAGE, and then transferred to PVDF membranes (Millipore, Darmstadt, Germany). Blocked with 5% skimmed milk (BD Biosciences, San Jose, CA, USA), membranes were incubated with anti‐FASN (CST, 3180), anti‐HNRNPA1 (Origene, TA314018), or anti‐GAPDH (Origene, TA802519) primary antibodies for 12 h at 4°C. After washed three times with TBST, membranes were incubated with HRP‐conjugated anti‐rabbit (Abcam) or anti‐mouse (Abcam) secondary antibodies for 1 h at room temperature. Protein band detection was performed by using ECL Prime Western Blotting Reagent (Amersham Biosciences, Piscataway, NJ, USA) and visualized using the digital gel image analysis system (Tanon, Japan).
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6

Protein Extraction and Western Blot Analysis

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At 24 h post-transfection, total proteins were extracted from the cells using RIPA buffer (Solarbio® Life Sciences), and quantified with a Protein BCA Assay Kit (Beyotime Biotechnology). The protein lysates were separated by sodium dodecy1 sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene difluoride (PVDF) membrane (PALL, Ann Arbor, MI, United States). After blocking in 5% skimmed milk (BD, San Jose, CA, United States) at room temperature for 2 h, the membranes were blotted with specific primary antibodies overnight at 4°C. The membranes were probed with secondary antibodies conjugated to horseradish peroxidase (HRP; Abbkine) after washing with 1 × TBST. The protein bands were detected using ECL solution (Abbkine) and imaged with BIO-RAD system (Bio-Rad Laboratories, Stuttgart, Germany). Primary antibody information is listed in Supplementary Table S3.
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7

Western Blot Analysis of Signaling Pathways

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Total proteins from livers or IAR20 cells were extracted using Radioimmunoprecipitation assay lysis buffer; the total protein concentration was quantified using the BCA method. The proteins were separated electrophoretically and wet-transferred to polyvinylidene fluoride (PVDF) membranes, blocked for 1 h with 5% skimmed milk (BD Biosciences), and then incubated with primary antibodies against JNK, p-JNK (Thr183/Tyr185), NF-κB (p65), p-NF-κB (Ser36), AMPKα, p-AMPK (Thr172), ACC, p-ACC (Ser79) (1:500), and β-actin (1:2,000) at 4°C overnight. The membranes were rinsed with Tris NaCl with Tween20 buffer, and incubated with secondary antibodies (1:2,000) at room temperature for 1 h. The chemiluminescence HRP substrate was added to the PVDF membrane, the membranes were exposed, and image grayscale values were analyzed using AlphaView SA 3.4.0.0 (ProteinSimple, San Jose, CA, USA).
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8

Western Blot Analysis of PKM2 Expression

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Cultured mDC cells were collected and lysed directly in RIPA buffer supplemented with a complete protease inhibitor (Roche, Basel, Switzerland) and phosphatase inhibitors (Roche). Protein levels in the lysates were quantified using a BCA kit. Proteins were separated via 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to nitrocellulose (NC) membranes (Millipore Corp., Billerica, MA, USA). The membranes were blocked with 10% skimmed milk (BD Biosciences) and subsequently incubated with anti-PKM2 (R&D Systems, Minneapolis, MN, USA) and anti-β-actin antibodies (Cell Signaling Technology, Danvers, MA, USA) at a dilution of 1 : 2000. The antibodies were dissolved in a solution containing 5% dried milk in Tris-buffered saline with Tween 20 (TBS-T) (20 mmol/L Tris–HCl buffer, pH 7.4, 150 mmol/L NaCl, 0.05% Tween 20). After extensive washing with phosphate-buffered saline (PBS), the membranes were then incubated with relevant horseradish peroxidase-conjugated secondary antibodies (1 : 1000 dilution; Zhongshan Biotech, Beijing, China). The labeled protein bands were detected using Super ECL Plus Detection Reagent. All protein levels were normalized to β-actin.
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9

Western Blot Analysis of Chondrocyte Proteins

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Differentiated chondrogenic aggregates were homogenized in RIPA buffer (Sigma, St. Louis, MO, USA) and centrifuged at 15,000× g for 30 min. Protein concentration was measured using the Bradford method (Bio-Rad, Hercules, CA, USA). Equal amounts of protein (30 μg) were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to a Hybond ECL nitrocellulose membrane (Amersham Pharmacia, Amersham, Buckinghamshire, UK). The membranes were blocked in 5% skimmed milk (BD Biosciences, Franklin Lakes, NJ, USA) at RT for 2 h and then incubated with specific primary antibodies overnight, at 4 °C. The membranes were washed with TBS containing 0.1% Tween-20 and then probed with HRP-conjugated secondary antibodies. Bands were detected using SuperSignal West Femto chemiluminescent substrate (Thermo Fisher, Waltham, MA, USA). The antibodies used are listed in Supplementary Table S1.
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10

Western Blot Analysis of Protein Signaling

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Protein samples were extracted from mouse spleens using a radioimmunoprecipitation assay (RIPA) buffer supplemented with a protease and phosphatase inhibitor cocktail (Roche). Protein concentration was determined using the BCA method (Thermo Fisher Scientific). Protein extracts (20 μg) were loaded onto and separated in 12% SDS‐PAGE gels, and then electrotransferred to polyvinylidene difluoride (PVDF) membranes. The membranes were blocked with 5% skimmed milk (BD) and incubated with the specific primary antibodies P‐JAK2, P‐STAT3, or β‐actin (Cell Signaling) overnight at 4°C, followed by incubation with HRP‐conjugated secondary antibodies for 1 h at room temperature. Immunoreactivity was detected using the ECL prime reagent (Millipore) and chemiluminescence signals were recorded on a chemiluminescence gel imaging system (Tanon).
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