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18 protocols using sodium orthovanadate

1

Protein Extraction and Western Blotting

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Cell lysates were collected at the indicated times in 1% NP-40 lysis buffer with complete protease inhibitor tablet (Roche, Basel, Switzerland), 1 mM phenylmethanesulfonylfluoride (PMSF), and 2 mM sodium orthovanadate (New England BioLabs, Ipswich, MA, USA). Protein levels were quantified with a Pierce BCA kit (Thermo Fisher Scientific) according to the manufacturer's instructions. Samples were run on 8–10% polyacrylamide gels and transferred onto nitrocellulose membranes (Bio-Rad, Hercules, CA, USA) blocked in 5% milk in TBS-T as per the antibody manufacturer's suggestions. Secondary antibodies were goat anti-rabbit-HRP or anti-mouse-HRP (Bio-Rad). Detection of protein was with Pierce ECL or Pierce Supersignal Pico (Thermo Fisher Scientific) reagents.
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2

Western Blot Analysis of Protein Expression

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Following virus infection and stimulation, growth medium was removed from cells and cell extracts prepared by lysis in SDS sample buffer (Bio-Rad) supplemented with β-mercaptoethanol (Sigma), complete mini-EDTA-free protease inhibitors (Roche), and 1 mM sodium orthovanadate (New England BioLabs). Lysates were then boiled for 5 min and 30 μl resolved by SDS-PAGE on a 12% polyacrylamide gel and proteins transferred to polyvinylidene difluoride (PVDF) membranes (ThermoScientific). After being blocked for 1 h with 5% dry semiskimmed milk in 0.1% PBS Tween 20 (PBS-T), membranes were washed with PBS-T and incubated with primary antibodies overnight at 4°C. After being washed, the membranes were incubated with the corresponding horseradish peroxidase-conjugated secondary antibodies (CST). Protein bands were detected using Clarity Western ECL substrate (Bio-Rad) and imaged with the Bio-Rad ChemiDoc MP imaging system.
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3

Syk Protein Detection in Neutrophils

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Neutrophils were lysed in Pierce radioimmunoprecipitation assay (RIPA) buffer (Thermo Fisher Scientific) containing protease inhibitors (cOmplete Mini; Roche Diagnostics, Indianapolis, IN) and sodium orthovanadate (New England BioLabs, Ipswich, MA). Proteins were resolved by SDS-PAGE under reduced conditions and transferred onto a polyvinylidene difluoride (PVDF) membrane. Membranes were blocked in Tris-buffered saline–1% Tween (TBS-T)–5% nonfat milk. Total Syk protein was detected with rabbit MAb D3Z1E anti-Syk (Cell Signaling, Danvers, MA) (1:1,000). The blots were subsequently reacted with mouse MAb AC-15 anti-β-actin (Sigma, St, Louis, MO) (1:200,000) to verify equivalent loading levels.
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4

Immunoprecipitation and Western Blot Analysis

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Cells were lysed by lysis buffer (50 mM Tris, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% Triton X-100) containing 1 mM sodium orthovanadate (New England Biolabs, Beverly, MA) plus a mixture of protease inhibitor cocktail (Sigma) for 10 min on ice, then sonicated and the cell debris was removed by centrifugation (18,000×g for 30 min). Bicinchoninic acid (BCA, Pierce, Rockford, IL) assay was preformed to determined protein concentrations. Cells lysates was precleared by incubation with Protein A/G beads (Sigma) for 1 h at 4 °C to eliminate nonspecific binding. The lysates were then subjected to inmmunoprecipitation overnight at 4 °C with indicated antibodies or purified mouse/rabbit immunoglobulin G (Sigma), followed by incubation with Protein A/G beads for 2 h. Precipitates were washed 4 times with a lysis buffer before resuspending with a 2× protein sample buffer, and were boiled for 5 min to release the bound proteins. Subsequently, the proteins were analyzed by Western blot analysis with the indicated antibodies.
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5

Quantitative Analysis of AMPK Phosphorylation

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Cells were lysed into lysis buffer containing 1% Na deoxycholate (Sigma), 150mM NaCl, 10mM PO4Na2/K, pH 7.2 and supplemented with inhibitor cocktail (Sigma), 2mM EDTA, 1mM sodium orthovanadate (New England Biolabs), phosphatase inhibitor (Thermo Fisher) and 5mM PMSF (phenylmethanesulfonyl fluoride, Sigma). Benzonase nuclease (Santa Cruz) was added to reduce viscosity in protein extracts. Protein content was measured using BCA method (Biorad). Each sample was dissolved in Laemmli 5X buffer, and then denatured at 100°C for 10min. After SDS-PAGE and transfer onto nitrocellulose membrane (Hybond, GE Healthcare), membranes were incubated with goat polyclonal primary antibodies against p-AMPk (1/1000, Millipore) or AMPk (1/1000, Sigma) overnight at 4°C. Membranes were incubated with anti-goat peroxidase-conjugated anti-IgG secondary antibody (1/5000, Santa Cruz), developed using ECL substrate solution, exposed to the Fusion Fx7 (Thermo Fisher) and analyzed using Quantity One software (Biorad).
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6

Characterizing ABCG2 Transporter Mutants

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Mitoxantrone, rhodamine-123, Ko143, ammonium molybdate, potassium antimony (III) tartrate hydrate, adenosine 5′-triphosphate disodium salt (ATP), ascorbic acid and ouabain octahydrate were purchased from Sigma-Aldrich (St. Louis, MO, USA). PEI (Poly-ethyleneimine) is obtained from Polysciences Europe (Eppelheim, Germany). G418 is from Santa Cruz Biotechnology (Dallax, TX, USA). Sodium orthovanadate is from New England Biolabs (Frankfurt, Germany). Oligonucleotides for site-directed mutagenesis were from Eurofins (Munich, Germany). Monoclonal mouse anti-ABCG2 (BXP-21) was purchased from Santa Cruz Biotechnology (CA, USA). Rabbit anti-β-actin (D6A8) was from Cell Signaling (Danvers, MA, USA). All other chemicals were of molecular biology grade from Sigma-Aldrich (St. Louis, MO, USA). Phusion DNA polymerase and DpnI are from NEB (New England Biolabs, MA, USA). Plasmids templates using in this study, pcDNA3.1(-)-hABCG2 (wild type) and pEGFPC1-hABCG2 (wild type) were kindly provided by Balázs Sarkadi (Institute of Enzymology, Research Centre for Natural Sciences, Budapest, Hungary).
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7

Quantification of Inflammatory Cytokines

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Skin biopsies were snap frozen in Precellys Soft tissue homogenizing CK14 tubes (Bertin instruments, Montigny-le-Bretonneux, France) and lysed with a Precellys 24 tissue homogenizer (Bertin instruments, Montigny-le-Bretonneux, France) in Cell signaling lysis buffer (Cell Signaling Technology, Leiden, The Netherlands) added Complete Mini Protease Inhibitor Cocktail Tablet (Roche diagnostics, Mannheim, Germany), HaltTM phosphate inhibitor cocktail (Thermo Fisher Scientific, Waltham, MA, USA) and Sodium Orthovanadate (New England Biolabs, Ipswich, MA, USA). The protein concentration was measured by the use of BCA protein assay kit (Pierce Biotechnology, Rockford, IL, USA) and adjusted to 2 μg/μl. Human TNF-α, IL-17A, IL-17AF, IL-22, IL-23, IL-1β and IL-6 and murine TNF-α, IL-17A, IL-17AF, IL-22, IL-23, IL-1β, IL-6 CXCL-1 and MIP-3α were analyzed in skin lysates by the MSD platform (Meso Scale Diagnostics, Rockville, MD, USA) according to the manufacturer´s instructions. In addition, the protein levels of murine TNF-α, IL-1β, IL-17A, IL-17AF, IL-22, IL-23 and IL-6 were analyzed in serum by the MSD platform. Standard curves were prepared with a matrix relevant for the sample and no cross-reactivity to mouse and human proteins were shown in the assays except from the murine IL-22 assay.
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8

BRAF Kinase Activity Assay

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Cells were collected and lysed on ice in lysis buffer (25 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% NP40, 1 mM EDTA, 5% glycerol) supplemented with PMSF (Cell Signaling), protease inhibitor cocktail (Millipore) and sodium orthovanadate (New England Biolabs). Exogenously expressed V5-tagged BRAF proteins were immunoprecipitated using a V5-specific antibody agarose conjugate (Sigma-Aldrich). Immunoprecipitations were carried out at 4°C overnight, followed by four washes with ice-cold lysis buffer. Pull-down complexes were eluted with V5 peptide (Sigma-Aldrich) and assayed by immunoblotting. In vitro kinase assays were performed using V5-tagged BRAF proteins isolated from 293H cells and kinase-dead K97R MEK1 (Millipore) as a substrate in the presence of 200 μM ATP. Kinase assays were conducted at 30°C for 15 min. MEK phosphorylation was assayed by immunoblotting with phospho-specific antibodies.
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9

Analyzing Neutrophil Signaling Pathways

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Mouse neutrophils were incubated in a microcentrifuge tube at 2.5e6 per mL in cRPMI along with LPS (400 ng/mL) and/or HK C. albicans hyphae at a ratio of 10:1 [pathogen to neutrophils] for 40 minutes at 37°C, 5% CO2. Cells were then collected and lysed with Laemmli sample Buffer (Bio-Rad; Hercules, CA) containing protease inhibitors (cOmplete Mini; Roche Diagnostics, Indianapolis, IN), reducing agent (NuPAGE Sample Reducing Agent; Thermo Fisher) and phosphatase inhibitors (sodium orthovanadate; New England Biolabs, Ipswich, MA). Proteins were resolved by SDS-PAGE, transferred onto polyvinylidene difluoride (PVDF) membrane, which were blocked with PBS-0.1% Tween (PBS-T)-5% bovine serum albumin (Sigma-Aldrich). Phosphorylated c-Fos levels were probed using rabbit mAb D82C12 anti-phospho-c-Fos (Cell Signaling; Danvers, MA) (1:1,000) and total c-Fos levels were probed using rabbit mAb 9F6 anti-c-Fos (Cell Signaling). For β-actin, mouse mAb AC-15 anti-β-actin (Sigma-Aldrich) (1:200,000) was used to confirm equal loading.
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10

Chlamydia Infection and Vanadate Treatment

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A total of 5.3 × 105 cells were seeded in 6-well plates and cultured for 24 h. Cells were infected with C. trachomatis (0.7 IFU/cell) and centrifuged at 700 × g for 1 h at 35°C. Infected cells were incubated at 37°C under a 5% CO2 atmosphere for 24 h. Afterwards, they were treated with or without 25 μM sodium orthovanadate (New England BioLabs GmbH) for 3 h.
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