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4 protocols using m0897

1

Immunohistochemical Analysis of NPC Biomarkers

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NPC biopsies, validated by pathologist Dr. Desheng Xiao (Xiangya Hospital), were obtained from Pathology Department of Xiangya Hospital. The NPC tissue array was purchased from Pantomics (Richmond, CA, USA). Paraffin sections from NPC patient samples were firstly dewaxed and antigen retrieved in citrate buffer using a microwave for 15min. After cooling of the citrate buffer to room temperature, the sections were incubated with PBS (containing 5% bovine serum albumin (BSA), and 3% FBS) for 30 min, and subsequently incubated with HoxB3 (ab83404, Abcam), HoxB13 (ab53931, Abcam), HoxC8 (HPA028911, Sigma) or LMP1 (M0897, DAKO) primary antibody for 1 h. The slides were thoroughly washed three times with PBS (5%BSA, 3%FBS) solution for 10 min each and then incubated for 30 min with HRP- conjugated secondary antibody for 30 min at room temperature. The slides were thoroughly washed three times with PBS before using DAB. The images were surveyed and captured using a CX41 microscope (OLYMPUS, Tokyo, Japan) with the Microscope Digital Camera System DP-72 (OLYMPUS, Tokyo, Japan) and differentially quantified by two pathologists, Dr. Bo Li and Dr. Songqing Fan (The Second Xiangya Hospital, Changsha, China).
In situ hydridization (ISH) was performed using the EBERs HRP conjugated probe and DAB as substrate from ISH kit (Life technologies), according to the instructions of the manufacturers.
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2

Immunohistochemical Analysis of NPC Biomarkers

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NPC biopsies, validated by pathologist Dr. Desheng Xiao (Xiangya Hospital), were obtained from Pathology Department of Xiangya Hospital. The NPC tissue array was purchased from Pantomics (Richmond, CA, USA). Paraffin sections from NPC patient samples were firstly dewaxed and antigen retrieved in citrate buffer using a microwave for 15min. After cooling of the citrate buffer to room temperature, the sections were incubated with PBS (containing 5% bovine serum albumin (BSA), and 3% FBS) for 30 min, and subsequently incubated with HoxB3 (ab83404, Abcam), HoxB13 (ab53931, Abcam), HoxC8 (HPA028911, Sigma) or LMP1 (M0897, DAKO) primary antibody for 1 h. The slides were thoroughly washed three times with PBS (5%BSA, 3%FBS) solution for 10 min each and then incubated for 30 min with HRP- conjugated secondary antibody for 30 min at room temperature. The slides were thoroughly washed three times with PBS before using DAB. The images were surveyed and captured using a CX41 microscope (OLYMPUS, Tokyo, Japan) with the Microscope Digital Camera System DP-72 (OLYMPUS, Tokyo, Japan) and differentially quantified by two pathologists, Dr. Bo Li and Dr. Songqing Fan (The Second Xiangya Hospital, Changsha, China).
In situ hydridization (ISH) was performed using the EBERs HRP conjugated probe and DAB as substrate from ISH kit (Life technologies), according to the instructions of the manufacturers.
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3

Characterization of DNA Repair Proteins

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Antibodies and their suppliers were: MTH1 (1:1000, rabbit, NB100-109, NOVUS, Abingdon, Oxon, England, UK), OGG1 (1:500, rabbit, NB100-106, NOVUS), XRCC1 (1:1000, rabbit, A300-065A, Bethyl Laboratories, Montgomery, TX, USA), MUTYH (1:1000, rabbit, PA5-27855, ThermoFischer, Waltham, MA, USA), EBNA1 (1:100, rat, E1BS1H4-14111, supernatant), LMP1 (1:50, mouse, M0897, Dako, Glostrup, Denmark), BZLF1 (1:1000, mouse, SC-53904, Santa Cruz, Dallas, TX, USA), GAPDH (1:2000, mouse, CB1001, Merck Millipore, Darmstadt, Germany). Antibodies used for immunofluorescence: pH2AX (1:100, mouse, 05–636, Millipore Corporation, Billerica, MA, USA), Anti-8-oxodG (1:50, mouse, ab206461, Abcam, Cambridge, MA, USA). Chemicals and their suppliers were: TH588 (Sigma-Aldrich, SML1069, St Louis, MO, USA), (S)-Crizotinib (TOCRIS, 6025, Abingdon, Oxon, England, UK).
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4

Immunohistochemical Analysis of CD20 and EBV-LMP

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Immunohistochemical analysis was performed on formalin-fixed, paraffin-embedded sections using primary antibodies for CD20 (Thermo scientific, MS-340, 1:100) and EBV-LMP (Dakocytomation, M0897, 1:60). Visualization of bound primary antibody was performed by incubation with Biotin-labelled donkey anti-mouse secondary antibodies (#715-065-150, Jackson ImmunoResearch Laboratories, West Grove, PA) for 1 h at room temperature and detection with avidin-labelled peroxidase (Sigma, 1:150) and diaminobenzidine tetrachloride (DAB, Sigma). A hematoxylin counterstain was performed to visualize nuclei.
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