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21 protocols using pyrrolidine

1

Syndiotactic Polystyrene Dissolution in Various Solvents and Ionic Liquids

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SPS was kindly supplied
by Idemitsu Kosan
Co., Ltd. It is 98% syndiotactic with an Mw of 152 000, and an Mw/Mn of 1.9. SPS was dissolved with a solvent in
a screw tube by heating the mixture at high temperature after influx
of dry nitrogen gas for 1 min. The solvents used included chloroform,
Py, toluene, THF (Wako Co.), piperidine, and pyrrolidine (Sigma-Aldrich).
The ILs used were 1-butylpyridinium bromide ([C4py]Br)
(Sigma-Aldrich, Tokyo Kasei), 1-butyl-4-methylpyridinium tetrafluoroborate
(Sigma-Aldrich), and 1-butylpyridinium bis(trifluoromethanesulfonyl)imide
(Tokyo Kasei). All of the ILs and solvents were used without purification.
The heating temperature of a sample was sometimes higher than the
boiling temperature of the solvent by 10–20 °C. In the
case of SPS/Py gels and SPS/pyrrolidine gels with 5–10 wt %
SPS, the heating temperatures were 130–140 and 120–130
°C, respectively. After SPS was perfectly dissolved, the solutions
were well stirred by using a vortex mixer, heated again for 2 min,
and finally cooled at room temperature (around 25 °C) for 1 day.
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2

Synthesis and Analysis of Organophosphate Compounds

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BDCIPP, d10-BDCIPP, and d12-tris(chloroethyl) phosphate (d12-TCEP), TBBA and 13C6-TBBA were purchased from Wellington Laboratories (Guelph, ON). Bis(1-chloro-2-propyl) phosphate (BCIPP) and d10-DPHP were synthesized by the Max Planck Institute for Biophysical Chemistry (Goettingen, Germany). The ip-PPP, tert-butyl-phenyl phenyl phosphate (tb-PPP), 13C2-DPHP were synthesized by the Small Molecule Synthesis Facility at Duke University (Durham, NC). 1-hydroxy-2-propyl bis(1-chloro-2-propyl) phosphate (BCIPHIPP) was a gift from Professor Adrian Covaci, University of Antwerp (Antwerp, Belgium).
Ammonium acetate, trimethylamine, pyrrolidine and 2,3,5-triiodobenzoic acid (TIBA), β-glucuronidase from limpets (>1M units/g) and sulfatase from Helix pomatia (>10,000 units/g) were purchased from Sigma-Aldrich (St. Louis, MO). StrataX-AW (60 mg, 3 ml) solid phase extraction columns (SPE) and the Luna C18(2) (2.5 µm, 50 × 2 mm) analytical column were purchased from Phenomenex (Torrance, CA, USA). Methanol and acetonitrile were HPLC grade (EMD Millipore Corporation, Bellerica, MA).
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3

TiO2 Enrichment of Phosphopeptides from iTRAQ Samples

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Phosphopeptides from each 4plex iTRAQ™ sample set were enriched using TiO2 microcolumns (TitanSphere Phos-TiO Kit, GL Sciences). Prior to enrichment, four TiO2 microcolumns per 4plex iTRAQ™ sample were conditioned using wash buffer (80% acetonitrile and 5% trifluoroacetic acid (TFA)) followed by loading buffer. The 4plex iTRAQ™ sample was resuspended in loading buffer labeled as solution 1 (1M lactic acid, 80% acetonitrile with 5%, TFA) and loaded evenly onto the four conditioned columns by centrifugation (1000 × g for 10 min). Columns were washed twice using loading buffer and wash buffer, respectively. Phosphopeptides were then sequentially eluted from columns using 50% acetonitrile with 50 mM TEAB (solution 2), 50% acetonitrile with 500 mM ammonium hydroxide (solution 3) and 50% acetonitrile with 5% pyrrolidine (solution 4) (Sigma, St. Louis). All elutions were collected separately (Fig. 1). Elutions using solution 2 from all four columns were pooled. Similarly, elutions from solution 3 and from solution 4 from all four columns were pooled to generate three fractions per sample. These fractions were dried under vacuum and resuspended in 50 μL of H2O containing 3% acetonitrile and 0.1% formic acid prior to LC-MS/MS analysis.
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4

HPLC Analysis of Amino Acids and Amines

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HPLC-grade acetonitrile and methanol were from Merck. Hydrochloric acid (HCl), glycine and hydroxylamine (>97.5%) were purchased from Reakhim. DEEMM and L-ornithine monohydrochloride (≥99%) was obtained from Fluka. Boric acid (≥99%) was purchased from Hopkin & Williams. Amino acid commercial standards (L-alanine, L-arginine hydrochloride, L-asparagine, L-aspartic acid, L-glutamine, L-glutamic acid, L-glycine, L-histidine, L-isoleucine, L-leucine, L-lysine, L-methionine, L-phenylalanine, L-proline, L-serine, L-threonine, L-tryptophan, L-tyrosine and L-valine, ≥99.5%), γ-aminobutyric acid (≥99%), formic acid (≥95%), putrescine (≥99.5%), phenyethylamine (≥99.5%), tyramine hydrochloride (≥98%), ethylamine hydrochloride (98%), methylamine solution (40%), pyrrolidine (99%), ethanolamine (≥98%) and taurine (≥99%) were purchased from Sigma; dopamine hydrochloride (99%), histamine dihydrochloride (≥98%) were purchased from Alfa Aesar; L(+)-α-aminobutyric acid (98%) were purchased from Acros Organics; β-aminobutyric acid (98%) were purchased from BLD Pharmatec. Ultrapure water was supplied by a Millipore Milli-Q Advantage A10 (Millipore) and 0.75 M borate buffer at pH = 9 was prepared in deionized water.
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5

Odor Compound Procurement Protocol

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Eugenol, CS2, 2,3-DMP, 2,5-DMP, OA, ALA, indole, quinoline, pyridine, pyrrolidine, vanillin, and IAA were purchased from Sigma-Aldrich. TMT was purchased from BioSRQ. All odor compounds were obtained at the highest purity possible.
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6

Volatile Organic Compound Analysis

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Eugenol, CS2, 2,3-DMP, 2,5-DMP, OA, ALA, indole, quinoline, pyridine, pyrrolidine, vanillin, and isoamyl alcohol (IAA) were purchased from Sigma-Aldrich. TMT was purchased from BioSRQ. All odor compounds were obtained at the highest purity possible.
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7

Synthesis of Colloidal Nanocrystal Superlattices

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Benzene (99.8%, anhydrous), n-butanol (99.8%,
anhydrous), 1-chloropentane (99%), cyclohexyl isocyanide
(98%), diphenylphosphine (98%), hexane (mixture of isomers, ≥99%,
anhydrous), isopropanol (99.5%, anhydrous), lead acetate trihydrate
(≥99.99%), methanol (99.8%, anhydrous), 1-octadecene (90%),
octane (≥99%, anhydrous), oleic acid (90%), pyrrolidine (≥99%),
selenium powder (99.99%, −100 mesh), tetrachloroethylene (≥99%,
anhydrous), toluene (99.8%, anhydrous), triethylamine (≥99%),
trifluoroacetic acid (99%), trifluoroacetic anhydride (≥99%),
trimethylbenzene (98%), and trioctylphosphine (90%) were purchased
from Sigma-Aldrich and used without further purification. Lead (II)
oxide (99.999+%) was purchased from Strem Chemicals. 1,4-Butanediol
(BD, 99%, ReagentPlus), diethylene glycol (DEG, 99%), diphenyl ether
(≥99%), ethylene glycol (EG, 99.8%, anhydrous), and hexadecane
(≥99%) were purchased from Sigma-Aldrich and degassed under
vacuum for ∼14 h at 60 °C prior use. For superlattice
formation, a distillation of the EG did not result in a significant
difference in the quality of the formed superlattice (see Figure S1).
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8

Thiol-Containing Macromolecule Synthesis

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All reagents were purchased from commercial sources or synthesized and used without further purification unless specified. They were poly(ethylene glycol) methyl ether (mPEG5k-OH, Mn = 5.4 × 103 g/mol measured by 1H NMR), 1-(3,5-bis-trifluoromethyl-phenyl)-3-cyclohexylthiourea (TU, synthesized)41 (link), 1,8-diazabicyclo[5.4.0]undec-7-ene (DBU, >99%, Sigma-Aldrich), dipropylamine (DPA, 99%, Sigma-Aldrich), dibutylamine (DBA, >99.5%. Sigma-Aldrich), pyrrolidine (C5A, >99%, Sigma-Aldrich), piperidine (C6A, >99.5%), hexamethyleneimine (C7A, 99%, Sigma-Aldrich), ethylene sulfide (98%, Sigma-Aldrich), 2,2-dimethoxy-2-phenylacetophenone (DMPA, 99%, Sigma-Aldrich). 2-Dimethylaminoethanethiol hydrochloride (DMA-SH·HCl, 95%) and 2-diethylaminoethanethiol hydrochloride (DEA-SH·HCl, 95%) were purchased from Sigma-Aldrich. Other aminothiol hydrochloride molecules (Supplementary Fig. 1) were synthesized as reported42 (link).
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9

Odorant-Induced Neuronal Connectivity

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Staged animals at either eclosion (0 dpe) or maturity (7 dpe) were exposed to odorants for 24 hours at RT. pyrrolidine was selected based on specific activation of the Ir75d receptor [29 (link)], which is expressed in olfactory sensory neurons that innervate the VL1 glomerulus [30 (link)], presynaptic to the mPN2 dendritic arbor [15 (link), 18 (link)]. Ethyl acetate was used to activate the DM1 glomerulus [31 (link)]. Olfactory exposure was done within a sealed 50 mL conical tube. Mineral oil control (500μL) or pyrrolidine (1:100 dilution; #394238, Sigma-Aldrich) was placed in a closed 1.5 mL microcentrifuge tube, with the cap center punctured by a 20 gauge needle. Genetic background (w1118) control and dfmr1 null (dfmr150M) mutants expressing R65G01-Gal4>UAS-mCD8::GFP were used to assess PN architecture and connectivity following odorant exposure.
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10

Purification of Polymers using Dialysis Bags

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Dialysis bags “CellaSep”, MWCO = 3000 Da (Orange Scientific, Braine-l′Alleud, Belgium) were used for the purification of polymer samples. Monomers, 2-ethyl- and 2-isopropyl-2-oxazolines (Sigma-Aldrich, St. Louis, MO, USA) were distilled over the calcium hydride. Sulfolane (Sigma-Aldrich, St. Louis, MO, USA) was purified by vacuum distillation. Pyrrolidine (Sigma-Aldrich, St. Louis, MO, USA) was distilled over calcium hydride.
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