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16 protocols using cooled ccd camera

1

Visualizing Cell Spreading and Motility

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In order to visualize cell spreading on a substrate, 1.5x105 cells were allowed to adhere for 20 min on a glass surface in a FluoroDish (World Precision Instr., Sarasota, FL). To monitor the presence and spreading of D. discoideum cells we used an inverted microscope (Olympus IX71 or Zeiss Axiovert 100M) and imaged by phase contrast and Reflection Interference Contrast Microscopy (RICM) as previously described [12 (link)]. Images and movies (15 frames per second) were acquired with an Olympus DP30 CCD camera or a High resolution black/white CCD camera (Hamamatsu CCD cooled camera). RICM images were sub-sampled at 1 image per 1.2 s, the background was subtracted and flattened and the noise filtered. Dark cell-surface contact zones were defined by segmentation and quantified as described [13 (link)].
To measure cell motility, cells were observed for 60 min (picture every 30 sec) by phase contrast with a Plan-Neofluar 10x magnification. Pictures were taken with a Hamamatsu CCD cooled camera. We used Particle tracking from the Metamorph software to track individual cell trajectories.
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2

Annexin V for Apoptosis Detection

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Annexin V binding to phosphatidylserine can be used as a marker of early apoptotic events60 (link). Binding of Cy5-conjugated annexin V to HCASMC was assessed using a kit (Biotium, USA). Cells were co-stained with Hoechst 33342 (Sigma, UK) to identify nuclei and visualised using a fluorescence microscope (Nikon, Japan) and images acquired using a cooled CCD camera (Hamamatsu, Japan). Equivalent numbers of cells were captured for each field. Fluorescence intensity was determined using analysis software (Image J, NIH, USA).
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3

Fura-2 Ca2+ Imaging Experiments

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For Fura-2 Ca2+ imaging experiments, the cells were first loaded with 2 μM Fura-2-AM in presence of 0.02% of Pluronic-127 (both from Life Technologies) and 10 μM sulfinpyrazone (Sigma) for 20 min at RT. Fura-2 loaded cells were washed in KRB + Mg + Ca and allowed to de-esterify for 20 min before cLTP induction.
After that, the coverslips were mounted into acquisition chamber and placed on the stage of a Leica DMI6000 epifluorescence microscope equipped with S Fluor ×40/1.3 objective. The probe was excited by alternate 340 and 380 nm using a Polychrome IV monochromator and the Fura-2 emission light was filtered through 520/20 bandpass filter and collected by a cooled CCD camera (Hamamatsu, Japan). The fluorescence signals were acquired and processed using MetaFluor software (Molecular Device, Sunnyvale, CA, USA). To quantify the differences in the amplitudes of Ca2+ transients the ratio values were normalized using the formula ΔF/F0 (referred to as normalized Fura-2 ratio, “Norm. Fura ratio”). At least two coverslips for each of three independent culture preparation were imaged for each condition. In mixed neuron-astroglial cultures, astrocytes were recognized as flat polygonal or star-like cells, while neurons were recognized by round bodies with few processes located on upper focal plane above the astrocytes. The cells with uncertain morphology were not taken in consideration.
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4

Immunofluorescence Imaging of DNA Damage Markers

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Cells were collected by centrifugation at 5000 × g for 5 min and washed once in PBS. Cells were then attached onto glass coverslips for 30 min at room temperature and fixed in cold (–20°C) methanol for 30 min. Coverslips were rehydrated in PBS for 10 min and blocked with 3% BSA in PBS for 30 min. Fixed cells were incubated with primary antibodies diluted in blocking buffer for 1 h. The following primary antibodies were used: FITC-conjugated anti-HA mAb (1:400 dilution, Sigma Aldrich, Clone HA-7), anti-Protein A pAb (1:400 dilution, Sigma Aldrich), anti-γH2A pAb (1:2000 dilution) (47 (link)) and anti-Rad51 pAb (1:2000 dilution) (48 (link)). After washing with PBS three times, cells were incubated with the Cy3-conjugated anti-rabbit IgG (1:400 dilution, Sigma Aldrich) for one hour at room temperature. After washing three times in PBS, coverslips were mounted with DAPI-containing VectaShield mounting medium (Vector Labs) and imaged using an inverted fluorescence microscope (Olympus IX71) equipped with a cooled CCD camera (Hamamatsu, Japan) and a PlanApo N 60× 1.42 NA oil lens. Images were acquired with the Slidebook5 software.
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5

Fluorescence In Situ Hybridization Imaging Cytometry

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Images were obtained with an IX-71 microscope (Olympus) equipped with a × 60 NA1.0 Plan Apo objective lens, a cooled CCD camera (Hamamatsu) and image acquisition software (Lumina Vision Version 2.4; Mitani Corporation). For imaging cytometry analyses of FISH, image stacks of three-dimensional data sets were collected at 0.5–1.0 μm intervals through the z axis, subjected to projections and used for automatic detection and counting of FISH signals with CELAVIEW RS100 software (Olympus) and Cellomics CellInsight (Thermo Fisher Scientific). Images in Figs 1c and 2c and Supplementary Fig. 1c were obtained with a confocal laser-scanning microscope (LSM 780, Carl Zeiss) equipped with × 63/1.4 Plan-Apochrome objective lens and a cooled CCD camera (Carl Zeiss). Image acquisition was done using LSM software (Carl Zeiss).
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6

Imaging Osteoclast [Ca2+]i Dynamics

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Human primary osteoclast precursors were plated on fibronectin (5 µg/ml) coated glass-bottom 35 mm dishes (MatTek Corporation) and cultured in basal media including RANKL (0, 15 or 33 ng/ml) and MCSF (15 and 33 ng/ml). Cells were incubated with basal media including ligands or not plus 10 mM HEPES and loaded at room temperature for 40 min with fura-2-AM (Invitrogen, F1221). Cells were washed twice and imaged using a fluorescence inverted microscope (Nikon T2000), cooled CCD Camera (Hamamatsu) connected to the image analysis software (Volocity, Improvision), which recorded fluorescence emission at 510 nm, following excitation at 340 and 380 nm alternated by a high-speed wavelength switching device (Lambda DG-4; Quorum Technologies). [Ca2+]i was calculated using fura-2-AM calcium imaging calibration kit (Invitrogen, F-6774). Test compounds were added to the bath. Changes in [Ca2+]i were measured at baseline for 120 sec.
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7

Immunostaining of LAMP1 in MPSI fibroblasts

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MPSI fibroblasts cells (Coriell Cell Repository, GM000798) were fixed in 4% paraformaldehyde in phosphate-buffered saline (PBS), blocked with 3% bovine serum albumin (BSA) in PBS, and stained with rabbit anti-LAMP1 (Abcam, ab24170, 1:200) followed by 1:500 dilutions of Alexa 488-conjugated anti-rabbit antibody (Molecular Probes). Mounting and staining of nuclei was done Vectashield with DAPI (Vector labs). Slides were visualized by conventional epifluorescence microcopy using a cooled CCD camera (Hamamatsu) coupled to an inverted Nikon Eclipse Ti microscope. Images were acquired using NIS elements software and analyzed with ImageJ.
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8

Targeted Radionuclide Therapy for Multiple Myeloma

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OPM2-Luc-GFP cells (2.5×107 in 100 μl PBS), as generated via lentiviral transduction [43 (link)], were inoculated intraperitoneally into 6-8 week-old SCID-mice (Charles River, Germany). Between days 25 and 42 after cell inoculation tumor bearing animals showing several tumor centres due to i.p. inoculation (n = 9) received six intraperitoneal applications of 213Bi-anti-CD38-MAb (1.85 MBq each in 100 μl PBS) every third or fourth day. For control of antibody specificity, another group of animals (n = 6) received six injections of 213Bi-DTPA (1.85 MBq each in 100 μl PBS) not targeting OPM2 cells. Control animals (n = 9) were injected six times with 100 μl PBS. Efficacy of therapy was controlled non-invasively in two mice each of the treatment group and the control group by bioluminescence imaging of tumor development 34, 47, and 59 days after tumor cell inoculation. Thus, bioluminescence imaging was performed two days after the third treatment (d 34) and five as well as 17 days after the sixth treatment (d 47, d 59). Imaging was done with anesthetized mice 10 min after intraperitoneal injection of 300 μl D-luciferin (50 mM in 0.9% NaCl) using a cooled CCD-camera (Hamamatsu, Germany). Symptom-free survival was monitored up to 200 days after inoculation of tumor cells.
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9

Visualization of Bacterial Chromosome Foci

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Fluorescence microscopy was performed as previously described.[9 ] All strains contained plasmid pLAU53. Unless stated otherwise, For study of EYFP-and CFP-labeled proteins, cells were grown overnight in L-broth containing 0.5% NaCl with appropriate antibodies at 37°C in the presence of 0.4% glucose (w/v), and then diluted to OD600≈ 0.1 and grown at 37°C to OD600 of 0.4–0.6. They were induced with 0.01% L-arabinose until fluorescent foci appeared (20-45 min for ori and ter foci). Cells were visualized with a 100× objective on a BX-50 Olympus microscope (Olypus Corp., Tokyo, Japan), equipped with a cooled CCD camera (Hamamatsu photonics, K. K., Hamamatsu, Japan) and a temperature-controlled stage. The CFP and EYFP foci were visualized using the 31044v2 and 41028 filters (Chroma). The images were collected and analyzed for number and localization of fluorescent foci by VOLOCITY or OPENLAB programs (improvision) and processed by Adobe Photoshop.[8 ]
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10

Live-cell Microscopic Imaging Protocols

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For Fig. 1D and Fig. S1A, cells on poly-D-lysine coated coverslips were placed in a magnetic holder (Chamlide CM-S22-1, LCI) and mounted on a Leica DM4000 microscope equipped with a 100x 1.4 NA oil objective, piezo stage (ASI), spinning disk confocal head (Yokogawa), EMCCD camera (Hamamatsu), 488- and 593-nm laser lines, and environmental enclosure (PeCon GmBH). Each position was imaged over a 4 micron z-depth (5 slices, 1 μm/slice) in both fluorescence channels at every timepoint, and in DIC at the first and last timepoints. For Fig. 6A, cells were grown in 35 mm glass-bottom dishes (MatTek) and imaged on a Zeiss Axiovert 200 microscope fitted with a 63x 1.4 NA objective, piezo stage (Prior), spinning disk confocal head (Perkin-Elmer), EMCCD camera (Andor), 488- and 561-nm laser lines, and temperature-controlled stage enclosure with CO2 support (Solent Scientific). Both systems were controlled by MetaMorph (Molecular Devices). Widefield timelapse imaging was performed on a Nikon TE2000 microscope equipped with 10x, 20x, and 40x air objectives, cooled CCD camera (Hamamatsu), temperature-controlled stage enclosure with CO2 support (Solent Scientific), and NIS Elements software (Nikon).
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