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Matlab version 2018a

Manufactured by MathWorks
Sourced in United States

MATLAB version 2018a is a high-performance numerical computing environment and programming language. It provides a wide range of mathematical, engineering, and scientific tools for data analysis, algorithm development, and visualization.

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8 protocols using matlab version 2018a

1

Steady-State Respiratory Data Analysis

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The average values of the respiratory data were recorded in 10-s intervals by the internal software of the ergospirometer. The steady state of the physiological variables (V̇O2, V̇CO2, V̇E, and HR) was calculated as the average over the last minute of the 4-min submaximal stages in Matlab version 2018a (MathWorks Inc., Natick, United States).
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2

Isotopically Non-Stationary 13C MFA for CHO Cells

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For CHO cells, previous studies already outlined the advantages of using isotopically non‐stationary 13C MFA for intracellular flux estimation [16 (link), 17 (link), 18 (link)]. Fluxes were estimated through analyzing the time series of isotopically transient 13C labeling profiles in compartment‐specific metabolite pools using MATLAB version 2018a (The MathWorks, Inc., Natick, Massachusetts, USA).
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3

Stochastic Simulation for Venom PK

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Both aims of this study were addressed using a stochastic simulation estimation (SSE) study using MATLAB version 2018a (The MathWorks, Inc., Natick, MA, USA) for simulation and NONMEM version 7.3 (ICON Development Solutions, Ellicott City, MD, USA) for population PK modelling and estimation using first-order conditional estimation method with interaction.
In this SSE study a venom ‘dose’ was constructed from a set of characteristic proteins and then administered to each virtual subject. We use the term characteristic to denote that these are proteins that have similar molecular weights that are characteristic of typical toxins. Each simulated venom consisted of a discrete set of toxins, each with a different mixture of molecular weights. The study consisted of 100 virtual patients who provided an intensive sampling protocol of 12 blood samples for total venom concentration (the sum of all toxins). Note this study is designed to evaluate the best-case scenario, and we do not anticipate that such a study would necessarily be practical in the clinical/field setting. The resultant timed venom concentrations were then analysed using compartmental pharmacokinetic models in NONMEM.
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4

Comparison of Cognitive Workload and EEG Metrics

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All data were analyzed with Matlab version 2018a (Mathworks, RRID:SCR_001622) except the psychometric test results, the NASA task load index and the Karolinska sleepiness scale, which were analyzed with SPSS version 27 (IBM, RRID:SCR_002865). All outcome measures were tested for normality with the Kolmogorov–Smirnov (K–S) test, and subsequently characterized by their mean and standard deviation (SD). Comparisons of psychometric test results, normally distributed NASA task load index scales and both EEG metrics between the exposures were analyzed with a two‐tailed paired t‐test and reported as mean difference and 95% confidence intervals (CI). Comparisons of the non‐normally distributed NASA task load index and the Karolinska sleepiness scale between the exposures were analyzed with the nonparametric Wilcoxon signed‐rank test and reported as median and range. Descriptive statistics were generated to characterize the study participants. Differences were regarded as significant at p < 0.05, with the Bonferroni correction applied for multiple comparisons.
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5

Biomechanical Effects of Fatigue

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Dependent variables were extracted from each trial then averaged across the three successful trials. Paired t-tests were used to compare peak values in kinematics (joint angles), and kinetics (muscle forces, joint moments, and ACL loading) pre and post-fatigue. Significance was determined at 𝛼< .05 level. A Benjamini-Hochberg correction was used to control for a false discovery rate of 5%. Hedges g effect sizes were also assessed to determine the magnitude of differences between pre and post-fatigue. They were interpreted as < .20 small, .50 medium, and > .80 large[39 (link)]. Statistical Parametric Mapping (SPM)[40 (link)] was used to compare joint moments and ACL loading across the landing phase. Matlab version 2018a (Mathworks Inc., Natick, MA) was used to perform statistical and data analysis.
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6

Treadmill Walking with EEG and Motion Capture

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Participants were asked to stand still for 2 min to record brain activity during quiet stance. Subsequently, participants were familiarised with treadmill walking and the preferred walking speed was determined. During data recording, participants walked for 200 strides on an instrumented treadmill (M-Gait, Motek Medical) at their preferred walking speed (Fig. 1). Participants were asked not to talk and to limit head movements during the experiment to avoid the occurrence of artefacts in the electroencephalogram (EEG) recording.

The experimental setup during the measurements

Three-dimensional full-body movements were recorded using reflective markers placed on the body according to the Vicon Plug-in Gait Full Body model [24 ] using the Vicon Motion Systems (Oxford, UK, 100 Hz). In addition, the force plates embedded in the treadmill (Motek Medical, NL, 2000 Hz) were used for step detection. Electrical brain activity was measured using a high-density EEG with 126 Ag–AgCl electrodes (WaveGuard, ANT Neuro, The Netherlands) distributed according to the five percent electrode system [25 (link)]. EEG was recorded using a biosignal amplifier (REFA System, TMSi, The Netherlands, 2048 Hz) and MATLAB version 2018a (The MathWorks Inc. USA). Both recording systems were synchronised using a digital trigger.
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7

Sequential Feature Selection for Lung Cancer Invasiveness Prediction

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The sequential forward selection (SFS) algorithm was applied to select significant features for model building. Before selection, all features were normalized by z-scores. Subsequently, the normalized features were forwarded into an iterative procedure of SFS. In the SFS, a feature that achieved the highest performance (i.e., accuracy) across the extracted features was selected first. Subsequently, from the remaining features, a feature that could further improve the performance in combination with the first selected feature was selected; the rest of the features were then selected as per this procedure until there was no further improvement in the performance. Based on the selected features, a logistic regression model based on a linear kernel was constructed. The feature selection and model construction were performed using the Statistics and Machine Learning Toolbox in MATLAB version 2018a (MathWorks, Natick, MA, USA).
To investigate if the proposed model could be used for tumor invasiveness prediction in the general setting, external validation was performed in an external validation cohort (n = 100) with lung cancer patients undergoing pGGN lung tumor resection.
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8

Effects of Acute Exposure on Brain Connectivity

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All data were analyzed with Matlab version 2018a (Mathworks, Natick, MA, USA) except the psychometric test results, the NASA task load index and the Karolinska sleepiness scale, which were analyzed with SPSS version 27 (IBM, Armonk, NY, USA). All outcome measures were tested for normality with the Kolmogorov–Smirnov (K-S) test, and subsequently characterized by their mean and standard deviation (SD). Changes in functional connectivity were assessed at two levels: whole-scalp network summary statistics and pair-wise channel comparisons. Comparisons of global efficiency, psychometric test results, the NASA task load index and the Karolinska sleepiness scale between the exposures were analyzed with a two-tailed paired t-test and reported as mean difference and 95% confidence intervals (CI). Descriptive statistics were generated to characterize the study participants. p-values were regarded significant at p < 0.05, with Bonferroni correction for multiple comparisons.
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