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10 protocols using anti α actinin

1

Cardiac Cell Proliferation Analysis

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The frozen sections of the heart (4 μm) from the P0 and P7 rats or the cells were fixed in 4% paraformaldehyde solution at room temperature for 12 min and washed three times with PBS. Then 10% normal goat serum and 5% bovine serum albumin in 1X PBS was used to block the sections or the cells for 1 h at room temperature. The sections were incubated overnight at 4°C with primary antibodies as follows: anti-Ki67 (Abcam, ab16667, 1:200), anti-α-Actinin (Cell Signaling Technology, Danvers, MA, USA, 69758, 1:200), anti-Aurora B (Abcam, ab2254, 1:200), and anti-pH3 (Cell Signaling Technology, Danvers, MA, USA, 69758, 1:500). After washing three times with PBS, the sections were incubated with Alexa-488- or Alexa-cy3-conjugated secondary antibodies at room temperature for 1 h followed by washing three times with PBS. Finally, microscopic images were obtained using a fluorescent microscope (Carl Zeiss, Oberkochen, Germany). The positive percentages of Ki67, Aurora B, and pH3 were quantified using NIH Image J software (MD, USA).
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2

Murine Immune Cell Mobilization Assay

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All antibodies used are against murine antigens. Antibodies: anti-CD18 (clone GAME-46; BD Biosciences), anti-CD11a (clone M17/4; BioLegend), anti-ICAM-1 (clone YN1; BioLegend), APC-anti-CD11b (clone M1/70; BioLegend), anti-Ly6G (clone 1A8; BioLegend), APC-anti-CD117 (clone 2B8; BioLegend), anti-CXCR2 (clone SA045E1; BioLegend), anti-α-actinin (Cell Signaling Technologies), anti-vinculin (Cell Signaling Technologies), anti-GFP (Cell Signaling Technologies), HRP-conjugated-anti-Rabbit IgG (Cell Signaling Technologies), anti-CD11a (clone IBL-6/2; Cell Signaling Techologies), Alexa Fluor 647-anti-Rat IgG (ThermoFisher Scientific). Reagents: recombinant murine CXCL1 (BioLegend), recombinant murine SCF (BioLegend), recombinant murine G-CSF (BioLegend), recombinant murine ICAM-1 (R&D Systems, BioLegend), 4-Hydroxytamoxifen (Tocris), carboxyfluorescein succinimidyl ester (CFSE, BioLegend), TagIt-Violet (BioLegend), Thioglycollate broth (Sigma Aldrich), PKH26/PKH67/Claret Far Red Membrane Dye (Sigma Aldrich).
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3

Investigating EGFR, JAK2, and STAT3 Signaling

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Western blots were performed as previously described21 (link), and the following antibodies were used: anti-EGFR (1:1000, Ca# 4267), anti-p-EGFR (1:1000, Ca# 3777), anti-JAK2 (1:1000, Ca# 3230), anti-p-JAK2 (1:1000, Ca# 3776), anti-STAT3(1:1000, Ca# 9139), anti-p-STAT3(1:1000, Ca# 4093), anti-α-actinin(1:1000, Ca# 6487) (Cell Signalling Technology, USA). Antibody against NPNT was obtained from Abcam (1:1000, Ca# ab64419). anti-EGFR neutralizing, clone LA1 (2 μg/mL, Ca# 05-101) was purchased from Sigma and EGFR dominant negative plasmid (pRK5RS-HERCD533) was obtained from Addgene.
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4

Platelet Protein Analysis by Western Blot

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Platelet samples for Western blot analysis were prepared by adding 3× Lämmli buffer (200 mM tris/HCl, 15% (v/v) glycerol, 6% (w/v) SDS, 0.06% (w/v) bromphenol blue, 1:10 β-mercaptoethanol) directly in the aggregation cuvettes to stop platelet responses, then boiled at 95 °C for 10 min under gentle shaking. Platelet proteins were separated by electrophoresis using 8% SDS-polyacrylamide gels followed by immunoblotting as previously described [28 (link)].
Phospho-antibodies against Syk S297, Syk Y525/526, Syk Y352, LAT Y191, PLCγ2 Y759, and MARCKS S159/163 (Cell Signaling Technologies, Danvers, MA, USA) were used diluted 1:1000 in 5% BSA or 1:700 for MARCKS. Blots probed with phospho-antibodies were stripped and reprobed with a corresponding antibody detecting the total protein, anti-Syk, or anti-PLCγ2 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), or other loading controls anti-β-actin or anti-α-actinin (Cell Signaling Technologies, Danvers, MA, USA) diluted 1:1000 in 5% BSA. After incubation with the appropriate secondary antibody, horseradish peroxidase (HRP)-conjugated goat anti-rabbit and anti-mouse IgG (BioRad Laboratories, Hercules, CA, USA) enhanced chemiluminescence (ECL) detection was performed using Fusion FX7 (Vilber Loumat GmbH, Eberhardzell, Germany).
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5

Immunofluorescence Staining of α-Actinin

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Cells were rinsed thrice in PBS before being fixed in 4% paraformaldehyde for 15 minutes, washed in PBS, and incubated for 20 min at ambient temperature in 0.5% Triton X‐100 before being rinsed in PBS. Dropwise injections of bovine serum albumin (5%) were used to the petri dishes, followed by incubation for 30 min at ambient temperature. Next, the cells were incubated in anti‐α‐actinin at 4°C overnight (#3134, Cell Signalling, Danvers, MA, USA), washed, incubated for 30 min at 37°C in the buffer of FITC‐conjugated goat anti‐rabbit IgG away from the light, rinsed with PBS, stained in 6‐diamidino‐2‐phenylindole (DAPI) and examined under (Olympus, Tokyo, Japan).
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6

Antibodies for Heparanase and Syndecan-1 Detection

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Rabbit polyclonal antibodies #1453 was prepared against purified latent 65 kDa heparanase [8 (link)]. Anti-heparanase monoclonal antibody was kindly provided by ImClone Systems (New York, NY). Anti-heparanase-2 antibody (20C5) has been described [15 (link)]. Rat anti-mouse syndecan-1 monoclonal antibody (clone 281-2) was kindly provided by Dr. Ralph D. Sanderson (UAB). This antibody is directed against the ectodomain of mouse syndecan-1 and is suitable for flow cytometry, immune staining and immunoblotting. Anti-vinculin and anti-actin monoclonal antibodies, phalloidin-TRITC, heparin, and methyl-β-cyclodextrin were purchased from Sigma (St. Louis, MO). Anti-α-actinin, anti-cortactin, anti-Rab7 and anti-Rab9 antibodies were from Cell Signaling (Beverly, MA). Anti-syntenin, anti-LAMP1, and anti-Myc Tag antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Latent 65 kDa heparanase was purified from medium conditioned by HEK-293 cells over expressing heparanase essentially as described [24 (link)].
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7

Analysis of Cytoskeletal Regulators

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Anti-phospho-cofilin (Ser-3), anti-cofilin, anti-phospho-MLC (Thr-18/Ser-19), anti-MLC, anti-phopsho-LIMK1 (Thr-508)/LIMK2 (Thr-505), anti-LIMK1, anti-phospho-Src family (Tyr-416), anti-phospho-Src (Tyr-527), anti-Src, anti-phospho-FAK (Tyr-397), anti-FAK, anti-α-actinin, anti-paxillin, anti-talin-1, and anti-tensin-2 antibodies were purchased from Cell Signaling Technology. Anti-PCTK3 and anti-vinculin antibodies were from Santa Cruz Biotechnology. Anti-FLAG (M2) antibody was form Sigma-Aldrich. Anti-Strep antibody was from Qiagen. Anti-Halo antibody was from Promega. Anti-GAPDH antibody was from Wako Pure Chemical Industries. Anti-RhoA and Rac1 antibodies and Alexa-555 conjugated-phalloidin were from Cytoskeleton. Anti-Myc antibody was from Enzo Life Sciences.
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8

Immunofluorescence Staining of NRCMs

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The NRCMs were fixed in 4% paraformaldehyde for 15 min at room temperature and then permeabilized with PBS containing 0.3% Triton X-100 for 20 min. Next, samples were blocked with 10% goat serum (GTX27481; GeneTex, Sanantonio, TX, USA) for 30 min and then incubated overnight at 4°C with the indicated primary antibodies. The next day, NRCMs were incubated with Alexa-Fluor-conjugated secondary antibodies (ZSGB-BIO,1 : 200) for 2 hours at room temperature. Anti-α-actinin (Cell Signaling, 69758S, 1 : 200) was used to measure the size of NRCMs. Cell colocalization analysis was performed using anti-Keap1 and anti-p62 coincubation and observed under the confocal microscope (TCS-SP8, Leica). DNA was stained with DAPI (1 μM in PBS).
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9

Immunofluorescence Staining of Paraffin and Frozen Samples

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Paraffin sections were obtained as described earlier. Frozen samples were sliced into 4-μm thickness. Frozen sections and cells were fixed with 4% paraformaldehyde, followed by permeabilization and blocking using 0.25% Triton X-100 and 5% goat serum (all Santa Cruz Biotechnology), respectively. Sections and cells were stained for anti–α-actinin (catalog #69758s), anti-p65 (catalog #8242s), anti–p-TBK1 (catalog #5483s), anti-cGAS (catalog #sc-515777) (all Cell Signaling Technology), anti-cTNT (catalog #bs-10648r, Beijing Biosynthesis Biotechnology), anti-DNA (catalog #CBL186, Sigma-Aldrich), and anti–8-OHdG (catalog #ab48508, Abcam) antibodies at 4°C overnight. Primary antibodies were labeled with fluorescent dye–conjugated secondary antibodies (catalog #A-11001, #A-11003, #A-11008, and #A-11010, all Thermo Fisher Scientific) and 4′,6-diamidino-2-phenylindole and photographed using a confocal laser-scanning microscope (LSM780, Carl Zeiss). Detailed information of antibodies is listed in Supplemental Table 4.
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10

Mitochondrial Membrane Integrity Assay

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The integrity of the mitochondrial membrane was tested using the fluorescent dye MitoTracker (Life Technologies). Briefly, live cells growing on 60-μm dishes (ibidi) were incubated in media containing 200 nM MitoTracker Red for 15 min at 37 °C in a 5% CO2 incubator. The cells were then fixed with 1% paraformaldehyde. The fixed cells were permeabilized with 1% (v/v) NP-40 in PBS before staining with antibodies for internal cell markers. The primary antibodies used in this assay were anti-α-actinin (1:200; Cell Signaling), anti-Troponin T (cTNT, 1:200; Millipore), anti-MYL2 (1:200; Millipore) and anti-MYL7 (1:200; Millipore). Confocal microscopic images were then obtained using a Zeiss Confocal Fluorescence Microscope (LSM 510 META, Version 3.2 SP2, Carl Zeiss).
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