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7 protocols using annexin 5 buffer

1

Mitochondrial Dysfunction Assay via TMRE Staining

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As done previously [36 (link), 37 (link)], cell media was collected 24 h after transfection and cells were washed with PBS then harvested with 0.25% Trypsin EDTA (ThermoFisher Scientific). Cells were then pelleted by centrifugation at 1000 RPM for 5 min, after which media was aspirated and cells were re-suspended in 300 μl of 100 nM tetramethylrhodamine ethyl ester (TMRE, Invitrogen) in 1x Annexin-V buffer (Invitrogen). Cells were incubated at 37 degrees C for 30–45 min, then analyzed on the FACSCanto-II (BD-Biosciences, University of Utah Flow Cytometry Core), where they were gated for proper morphology, GFP (excitation 488 nm, emission filter 530/35), and TMRE (excitation 561, emission filter 585/15) with FACSDiva software.
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2

Apoptosis Analysis of OSCC Cells

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Flow cytometry was performed to explore apoptosis of OSCC cells. After transfection for 48 h, cells in log phase were gathered and rinsed with cold PBS twice. Next, cells were suspended to adjust concentrations to 106/ml. After that, cells were added into Annexin-V buffer (Beyotime, Shanghai, China) and mixed with 10 μL (20 μg/ml) Annexin-V-FITC and 5 μL (50 μg/ml) PI (Beyotime, Shanghai, China) for incubation at room temperature for 20 min without light. In the end, 400 μL Annexin-V buffer were appended and Attune NxT flow cytometer (Invitrogen, USA) was applied to analyze apoptosis rate of cells.
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3

Annexin-V Flow Cytometry Apoptosis Assay

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For apoptosis assays, cells were incubated with Annexin-V Pacific Blue conjugate and TO-PRO-3 (Invitrogen, Waltham, MA, USA) in Annexin-V buffer (Invitrogen). Flow cytometry was performed using an LSR Fortessa cytometer (BD Biosciences, San Jose, CA, USA). FlowJo v10 (Tree Star, Inc., Ashland, OR, USA) was used for data analysis.
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4

CMV-Specific PBMC Immune Response

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Freshly thawed PBMC from CMV seropositive and seronegative donors were stained with CellTrace™ Violet and stimulated with CMV antigen in growth medium in the presence of neutralizing mouse monoclonal antibodies (mAb) anti-CTLA-4 (Biolegend; clone L3D10) and/or anti-PD-1 (Biolegend; clone A17788B). After 6 days of incubation, CellEvent™ Caspase-3/7 Green Detection Reagent was added to PBMC cultures 30 min, followed by Zombie Yellow™ viability dye, followed by anti-CD3 Alexa-Fluor 700 (eBiosciences) and anti-CD4 PC 5.5 (Beckman Coulter) for 30 minutes at room temperature. Lastly, cells were washed with Annexin V buffer diluted to 1X (eBiosciences) followed by Annexin V APC (eBiosciences). Cells were analyzed using a Gallios Flow Cytometer.
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5

Annexin V-PI Staining Assay

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Cells were seeded at 2 × 105/well in their respective media and infected with the indicated MOIs of either VSV-XN2 or VSV-gp160G. After incubation for the indicated times, the cells were collected, washed in PBS, and suspended in Annexin V buffer (eBioscience). Annexin V (Southern Biotech) and propidium iodide (PI; BD Pharmingen) staining was performed according to the protocol supplied by the manufacturer. Cell staining was analyzed using flow cytometry (with an Aria IIu cell sorter). The cells were considered dead if they stained positive for Annexin V.
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6

Quantifying Apoptosis and Cell Cycle

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Caspase 3/7 enzyme activities were measured by using Caspase-Glo 3/7 Assay Systems (Promega, #G8090) according to manufacturer’s protocol. Cells were incubated with indicated compounds for 24 h, and the luciferase activities were measured after substrate incubation with a TECAN Infinite plate reader. Apoptosis assay was carried out using annexin V-APC (Thermo Fisher, #A35110) and propidium iodide (PI, BD Biosciences, #556463) according to manufacturer’s protocol. In brief, harvested cells (0.2 × 106) were washed with PBS followed by annexin V buffer (Thermo Fisher, #V13246), and stained with Annexin V/PI mixture for 15 min at 25 °C. Cell cycle fractions were determined through PI nuclear staining. In brief, harvested cells (0.2 × 106) were fixed with 70% cold ethanol, and stained with PI staining buffer (0.03 mg ml−1 PI, 0.1 mg ml−1 RNAse A, 0.1% Triton-X in PBS) for 30 min at 25 °C. The staining profile was acquired (≥10,000 cell events) using LSR II Flow Cytometer (BD Biosciences). The acquisition was analyzed using the FlowJo 8.1.1 software (Tree Star).
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7

Isolation and Characterization of Extracellular Vesicles

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Spent media from 0 or 10 mM NH4Cl-treated C6 cells were briefly centrifuged for 5 min at 4 °C and 3000× g to remove cell debris, before storage at −80 °C to await analysis. These supernatants were thawed on ice, and then centrifuged at 4 °C and 17,000× g for 15 min, before being resuspended in either serum free media (for stimulating GPNT cells), or Annexin V buffer (Thermo Fisher Scientific, Dartford, UK) for FACS flow cytometric analysis. EVs were stained with or without PE Cy7 Annexin V (to detect exposed phosphatidyl serine), from eBioscience (Thermo Fisher Scientific, Dartford, UK), as described previously [58 (link)]. Samples were acquired for 2 min on a FACS Canto II (BD Biosciences; Wokingham, Berkshire, UK), and EVs were counted by reference to enumeration beads (Flow count beads; Beckman Coulter, High Wycombe, UK). Data were normalised to facilitate pooling of multiple experiments (for presentation as fold increases); the range of total EV values for these normalised recordings varied from 549 to 2228 events, and whereas Cy7 annexin EVs ranged from 77 to 278 events.
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