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4 protocols using protease inhibitors

1

Western Blot of PRR11 Protein

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The kit used in protein lysis was radioimmunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China), which was added with protease inhibitors (Bioss, Beijing, China). The kit used in concentration examination of proteins was the BCA kit (Thermo Fisher Scientific, Inc.). Proteins of equal quantity (30 μg) were separated by 12% SDS-PAGE (sodium dodecyl sulfate-polyacrylamide gel electrophoresis). The samples were then mounted onto polyvinylidene difluoride membranes (Millipore, Billerica, MA). Then, an overnight incubation was performed on 5% skimmed milk powder-blocked membranes (1 h) as well as primary antibodies. The used antibodies were PRR11 (ab237526, Abcam, UK) and GAPDH (ab9485, Abcam, UK). Following 3 washes (10 min/time) with PBST, the treated membranes were subjected to 1 h of secondary antibody incubation (ab6721, Abcam, UK, goat anti-rabbit IgG, horseradish-labeled). Following 3 washes with PBST (10 min/time), the membranes were scanned under an optical illuminator (GE, USA).
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2

Western Blot Analysis of Protein Markers

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Total proteins from the cells were lysed in radioimmunoprecipitation assay buffer (Beyotime, Shanghai, China, cat. no.: P0013B) containing protease inhibitors (BIOSS, Beijing, China). Protein concentration was determined using a BCA Protein Assay kit (Thermo Scientific Pierce, U.S.A., Cat. lot.: 23225). An equal amount of total proteins was then separated by 10% SDS/PAGE and transferred on to a polyvinylidene difluoride membrane (cat. no. PK-NEF1002; PerkinElmer, Inc., Boston, MA, U.S.A.). Next, fat-free milk (5%) was used to block the membranes for 2 h at room temperature. Following blocking, the membranes were incubated with primary antibodies overnight at 4°C. The blots were subsequently incubated with horseradish peroxidase–conjugated secondary antibodies (Wuhan Boster Biological Technology, Ltd., Wuhan, China; cat. no. BA1054) and then developed using enhanced chemiluminescence detection kit (32106, Thermo Scientific™ Pierce, U.S.A.) according to the manufacturer’s protocol. The primary antibodies used included anti-β-actin (4967, CST, U.S.A.), Col I (ab90395, Abcam, U.S.A.), anti-Col III (ab23445, Abcam, U.S.A.), anti-S100A4 (ab41532, Abcam, U.S.A.), anti-CXCR4 (ab219178, Abcam, U.S.A.), and anti-ALP (ab83259, Abcam, U.S.A.) antibodies.
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3

Stiffness Measurement of Tumor Tissue by AFM

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AFM was used to measure the stiffness of tumor tissue. Briefly, frozen sections of tumor tissues from HCC and HCC-SDS mice were incubated in PBS containing protease inhibitors (1:100, Bioss) and 20 mg/mL propidium iodide (Sigma Aldrich, Germany) before the examination. A BIO-AFM (MFP-3D BIO, Asylum Research, USA) mounted on a fluorescence microscope (Olympus) was used to conduct AFM indentation. With a 10 μm diameter borosilicate glass spherical tip covering, the silicon nitride cantilevers were adjusted with a spring constant of 0.03 N/m. Before each measurement, the cantilever underwent a thermal oscillation calibration. Young's elastic modulus was calculated using a Hertz model with a Poisson's ratio of 0.5 based on the force-distance curves acquired by cantilever tapping the tumor matrix.
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4

Comprehensive Protein Expression Analysis

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Cells were collected and lysed by strong RIPA lysate containing protease inhibitors (1: 50 dilution, Bioss Biotechnology Company, Beijing, China). BCA‐200 was used to determine the concentration of protein in the lysate. The membranes were sealed with 5% skim milk for 1 h then incubated with anti‐ASIC1a (1: 200; Alomone Laboratories, Jerusalem, Israel), anti‐AKT, Phospho‐AKT, GSK3β, Phospho‐GSK3β, Snail, Smad2/3, Phospho‐Smad2/3, TGF‐β1, β‐actin (1:1000, Cell Signalling Technology, Danvers, MA, USA), anti‐MMP2, MMP9, α‐catenin, β‐catenin, E‐cadherin, vimentin and fibronectin (1:500, Abcam, Cambridge, UK) antibodies overnight at 4°C. The membranes were incubated in TBST buffer solution containing the secondary antibody (1:4000) at room temperature for 1 h. The results displayed by the gel imaging system were compared with the percentage of the control signal to correct for the difference between the imprints.
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