The largest database of trusted experimental protocols

7 protocols using ab5666

1

Hippocampal Protein Extraction and Immunoblot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein extraction from hippocampi and immunoblots of UPR and synaptic proteins were performed as described [23 (link), 24 (link)]. Proteins were detected with the following antibodies: eIF2α-P (S51) (1:1000; 9721, Cell Signaling) and eIF2α (L57A5) (1:1000; 2103, Cell Signaling), ATF4 (CREB-2, 1:1000; sc-200, Santa Cruz), GADD34 (1:1000, 10449-1-AP, Proteintech), PERK-P (1:200, 32577, Santa Cruz), PERK (1:1000, 3192, Cell Signaling), SNAP25 (1:10,000, ab5666, Abcam), PSD-95 (1:1000, EP2652Y, Millipore) total tau (Tau 5, 1:5000, AHB0041, Invitrogen), GSK3β (1:2000, 9832, Cell Signaling), pSer9-GSK3β (1:1000, 9322, Cell Signaling) and pTyr279/216-GSK3α/β (1:1000, 05-413, Millipore). Horseradish peroxidase (HRP)-conjugated secondary antibodies (1:10,000; DAKO) were applied, and protein was visualised using enhanced chemiluminescence (GE Healthcare) and quantitated using ImageJ. Antibodies against GAPDH (1:5000; sc-32233, Santa Cruz) and Beta-III-tubulin (1:5000, MAB1637, Millipore) were used to determine loading.
+ Open protocol
+ Expand
2

Comprehensive Western Blot Protocol for Synaptic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
For Western blot, the procedures of electrophoresis, transfer, and immunodetection were performed according to our previous study (Xu et al., 2012 (link); Hu et al., 2013 (link)). The primary antibodies used were as follows: antibody for the Ras-related protein Rab-3A (Rab3a, ab3335, 1:2000); syntaxin-binding protein 1 (Stxbp1, Munc18-1, ab124920, 1:4000); synapsin-1 (Syn1, ab18814, 1:1000); syntaxin-1A (Stx1a, ab41453, 1:3000); synaptosomal-associated protein 25 (SNAP25, ab5666, 1:4000); vesicle-associated membrane protein 2 (VAMP2, ab3347, 1:2000); synaptophysin (ab52636, 1:1000) (all purchased from Abcam); synaptotagmin 1 (Syt1, Millipore MAB5200, 1:1000); syntaxin-1B (Stx1b, Synaptic Systems 110402, 1:1000); and PSD95 (CST #3450, 1:1000). Horseradish peroxidase-conjugated anti-mouse and anti-rabbit IgG (purchased from Bio-Rad, dilution 1:15000) were used as secondary antibodies. After immunodetection, the intensity of the immunostained bands were normalized for the total protein intensities measured by Coomassie blue from the same blot (Van den Oever et al., 2008 (link); Counotte et al., 2010 (link)). The images were subjected to densitometric analysis performed using Quantity One software (Bio-Rad).
+ Open protocol
+ Expand
3

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from cell lines or tissues using RIPA lysis buffer (Beyotime, Shanghai, China). Total protein was quantified using the bicinchoninic acid protein kit (Thermo Fisher Scientific). Protein (40 µg per lane) was separated with 10% SDS-PAGE and transferred onto PVDF membranes (Thermo Fisher Scientific). Subsequently, the membranes were blocked with 5% skimmed milk in TBST for 1 h at room temperature. The membranes were incubated overnight at 4°C with primary antibodies against: IL-6 (Abcam; ab239007, 1 : 1000), IL-1β (Abcam; ab118973, 1 : 1000), TNF-α (Abcam; ab219620, 1 : 1000), LC3 (Abcam; ab136668, 1 : 1000), p62 (Abcam; ab109330, 1 : 1000), Tim-1 (Abcam; ab5666, 1 : 1000) and GAPDH (Abcam; ab179467, 1 : 1000). Then, the membranes were incubated with HRP-conjugated secondary antibodies (Abcam; ab7356, 1 : 5000) for 1 h. Protein bands were visualized using the ECL kit (Thermo Fisher Scientific). β-actin was used as the loading control. IPP 6.0 (Image-Pro Plus 6.0) was used for the densitometry analysis.
+ Open protocol
+ Expand
4

Quantitative Analysis of SNAP25 and EVL Proteins in Mouse Brain and Hypothalamus

Check if the same lab product or an alternative is used in the 5 most similar protocols
The brain and hypothalamic tissues from 24-week-old mice (n=3-4 in each experimental group) were homogenized in RIPA lysis buffer (radioimmunoprecipitation buffer) plus protease inhibitors. The samples were boiled in SDS-PAGE loading buffer, separated on 12% Mini-PROTEAN TGX Precast Protein Gels (Bio-Rad), and transferred to a PVDF Blotting Membrane (cytiva). After blocking with 5% nonfat milk for 1 hour at room temperature (RT), the blots were incubated with rabbit Anti-SNAP25 antibody (ab5666, Abcam, 1:1000), rabbit Anti-EVL antibody (ab204835, Abcam, 1:1000) overnight at 4°C. Rabbit anti-β-Actin antibody (4967S, Cell Signaling Technology) was used as a loading control. After washing three times with Tris-buffered saline (TBS), the blots were incubated with ECL Donkey Anti-Rabbit IgG, HRP-Conjugated Antibodies (NA934V, GE healthcare Life science, 1:10000) at RT for 1 hour. The blots were developed with Pierce ECL Western Blotting Substrate (TE261327, Thermo Fisher Scientific). The chemiluminescence was analyzed using ImageQuant LAS-4000 mini (FUJIFILM).
+ Open protocol
+ Expand
5

Antibody Panel for Neural Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies used included actin (mouse, Sigma A3853), αS (rabbit, Abcam ab138501, clone MJFR1), beta-3-tubulin (chicken, Abcam ab41489), GAPDH (rabbit, Abcam ab181602), Homer1 (rabbit, synaptic systems 160003), N-cadherin (rabbit, Abcam ab76011), PMCA1 (rabbit, Abcam ab190355), POU3F2/Brn2 (rabbit, CST mab#12137), SNAP-25 (rabbit, Abcam ab5666), vGlut2 (mouse, Abcam ab79157 clone 8G9.2).
+ Open protocol
+ Expand
6

Western Blot Analysis of Synaptic Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Standard western blot techniques were used (Criterion Gel System,
Bio-Rad, Hercules, CA, 4–15% or 15% gradient gels).
Equal volume of conditioned medium or cell lysate as appropriate was tested and
normalized to homogenate protein concentration (for medium) or GAPDH (for
lysate). Primary antibodies used include: rabbit polyclonal antibody for BDNF
(sc20981; Santa Cruz Biotechnology, Santa Cruz, CA, USA), rabbit polyclonal
antibody for TrkB (ab33655; Abcam, Cambridge, MA, USA), rabbit monoclonal
antibody for Epac1 (ab109415; Abcam), rabbit polyclonal antibody for Epac2
(ab124189; Abcam), rabbit polyclonal antibody for SNAP25 (ab5666; Abcam), rabbit
monoclonal antibody for SNAP47 (ab172609; Abcam), rabbit monoclonal antibody for
GAPDH (14C10;Cell Signaling Technology, MA, USA), and monoclonal antibody for
B-actin (ab5316; Abcam). Fluorescent secondary antibodies were used from Li-Cor
Biosciences (Lincoln, Nebraska, USA). Concentration of primary and secondary
antibody was used per manufacture’s recommendation. Protein expression
was determined as relative fluorescence compared to housekeeping protein.
+ Open protocol
+ Expand
7

SNAP-25 Cleavage and Purification from Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
HEK293T cells were transfected rat SNAP-25 with HA-tag at the N-terminus. Cell lysates were collected after 24 h and incubated with En-LC (at the final concentration of 2 μM) at 37°C for 1 h. SNAP-25 antibody (Abcam, ab5666) was added and incubated at 4°C overnight. The mixtures were then incubated at 4°C for 7 h with Protein G agarose beads. Afterwards, Protein G beads were pelleted, washed three times, and SDS loading buffer was added. Samples were heated at 55°C for 10 min and analyzed by SDS-PAGE gels. The bands corresponding to full-length SNAP-25 and the cleaved product were cut and analyzed by Mass Spectrometry. To purify cleaved SNAP-25 from neurons, rat cortical neurons (14 days in vitro) were exposed to En-LC-HN ligated with BoNT/A-HC (0.3 μl ligation mixture) for 24 h. Neuron lysates were collected and subjected to immunoprecipitation assays and mass spectrometry analysis as described above for HEK293T cell lysates.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!