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6 protocols using hoechst 33258

1

Immunofluorescence Staining of Ovarian Follicle Cells

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Rabbit anti-Zfrp8 antibody [8 (link)] were used at 1:1000–1:2000, Rabbit anti-RpS2 (ARP63572, Aviva systems Biology) at 1:1000, rabbit anti-PDCD2 (from P. Sharp, MIT, MA, USA, REF) 1:2000. Guinea pig anti-Traffic Jam (Tj) (1:5000, from D. Godt, Toronto, Canada); rabbit anti-Bazooka (Baz) (1:500 from A. Wodarz); mouse anti-1B1 antibody (1:20, developed by H. Lipshitz, from the Developmental Studies Hybridoma Bank (Iowa University, Iowa City, IA, USA); and rabbit anti-RanGAP (1:700, from B. Ganetzki), were used to mark follicle cells, spectrosomes, cytoplasm and the nuclear envelope in ovaries. Alexa Fluor-546 phalloidin (Invitrogen) and secondary antibodies (Jackson Laboratories) were used at 1:300. Hoechst 33258 (1:5000) and Vectashield with DAPI (vector Laboratories) were used to stain DNA. Images were captured using a Leica TSC SP8 or Leica TSC SP5 laser scanning confocal microscopes (objective 63× oil), analyzed with Leica Microsystems software and further processed using Adobe Photoshop.
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2

Immunofluorescence Staining of PML, PCNA, and Cyclin D1

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Immunofluorescence stainings were performed as described [22 (link), 32 (link)]. For PML immunostaining, cells were fixed with 4% formaldehyde for 10 min and permeabilized with 0.25% Triton X-100 for 5 min. Antibodies against PML (Milipore, MA), PCNA (Santa Cruz Biotechnology, Santa Cruz, CA) and cyclin D1 (Nichirei Bioscience, Tokyo, Japan) and secondary antibodies conjugated with Alexa Fluor 488 (Molecular Probes, Eugene, OR) or Cy-3 (Jackson ImmunoResearch Laboratories, West Grove, PA) were used. Cells were counterstained for DNA with Hoechst 33258 (4 μg/mL in Vectashield mounting medium; Vector Laboratories, Burlingame, CA). Images were captured using a CCD camera attached to a fluorescence microscope (Keyence, Osaka, Japan). For each data point, > 50 cells were counted from at least three independent samples.
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3

Immunofluorescence Staining of Blood Cells

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Immunofluorescence staining was performed as described previously [25 (link), 26 (link)]. Blood cells were attached onto slide glasses by cytospin centrifugation. Cells were fixed with 4% formaldehyde for 10 min and permeabilized with 0.2% Triton X-100 for five min. Antibodies against γ-H2AX (1:5000 dilution, NB100-384; Novus, Centennial, CO, USA), parkin (1:50 dilution, 14060-1-AP; proteintech, Tokyo, Japan), Nrf2 (1: 100 dilution, ab31163; Abcam, Cambridge, UK) and secondary antibodies conjugated with Alexa Fluor 488 (1:100 dilution, A11034; Molecular Probes, Eugene, OR, USA) were used. Cells were counterstained for DNA with Hoechst 33258 (4 μg/mL in Vectashield mounting medium: Vector Laboratories, Burlingame, CA, USA). Image acquisition and evaluation were conducted with a Keyence BZ-X700 fluorescence microscope (Keyence Corporation, Osaka, Japan) using Hybrid Cell Count software (BZ-II Analyzer; Keyence Corporation). Blood cell number in each sample was indicated in the parentheses in S2 and S4 Figs.
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4

Osteoclast Formation Assay with W3

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For immunofluorescence studies, RAW 264.7 cells were stimulated with RANKL (50 ng/mL) for 6 days to induce osteoclast formation in the presence or absence of W3 (0.1, 0.5 and 2.5 μg/mL). After incubation, the cultures were fixed in 4% paraformaldehyde in PBS and cells permeabilized with 0.1% Triton X-100 in PBS for 15 min. Cells were then stained for F-actin by incubation in TRITC-conjugated phalloidin (Sigma Alrich, St Louis, USA) for 45 min at 37℃, then washed with PBS and mounted with Hoechst 33258 (Vector Laboratories, Peterborough, UK). Cells were inspected with an Olympus x41 microscope. The experiments were carried out 3 times in triplicate measurements.
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5

Immunohistochemical Analysis of Placental Tissues

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First-trimester placental tissue (FiTPT) at 7–11 weeks of gestation (n=7) and full-term placental tissue (FTPT, n=15) were fixed in 4% PFA for 24 h, embedded in paraffin, and sectioned according to standard histology methods. Paraffin-embedded tissues were deparaffinized in 2 changes of xylene and rehydrated in decreasing concentrations of ethanol.
Antigen retrieval was performed in Tris-EDTA buffer (10 mM Tris Base, 1 mM EDTA solution, pH 9.0) at +95°С for 30 min. Nonspecific reactivity was reduced by incubating tissue sections in blocking solution (0.5% BSA and 1% goat serum in 0.1 M PBS with 0.3% Triton X-100) for 30 min.
Immunostaining was accomplished by overnight incubation at +4°С with primary antibodies (Table S3) diluted in Antibody Diluent (Dako, Denmark). After extensive washing with 0.1 M PBS, samples were incubated in the appropriate species-specific secondary antibodies (Table S3) diluted 1:1000 in Antibody Diluent (Dako, Denmark) for 1 h at RT in the dark. After nuclear staining with Hoechst 33258 (Vector Laboratories, UK), slides were mounted in Mowiol® 4-88 (Sigma, USA).
Confocal analysis was performed with a Zeiss LSM 510 Meta microscope (Zeiss, Germany) and images were captured with Zeiss LSM Image Browser software.
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6

Immunohistochemical Analysis of Tumor Xenografts

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T47D and MCF7 tumor xenografts from NOD/SCID mice were fixed in 10% phosphate-buffered formalin and embedded in paraffin. Paraffin sections were cut at a thickness of 2 μm, mounted on SuperFrostTM Plus microscopy slides (Menzel-Gläser), and dried at 70 °C for 2 h. The sections were dewaxed in xylene and rehydrated according to the standard histopathological procedures. The slides were first placed in the solution of Tris-EDTA pH 9.0 and autoclaved for 7.5 min for antigen retrieval. The slides were then blocked with 3% hydrogen peroxide for 15 min and incubated with biotin conjugated UEA-1 lectin (Vector Laboratories) for 1 h at room temperature followed by fluorescein-conjugated streptavidin (Jackson ImmunoResearch) for 1 h at room temperature. Finally, the slides were stained with Hoechst 33258 for 15 min and mounted with Vectashield (Vector Laboratories). For Globo H staining, the slides were stained using Benchmark XT machine (Ventana). The slides were added with anti-Globo H antibody (Vk9) in power block HK085-5K solution (Ventana) at 37 °C for 1 h followed by biotin conjugated anti-IgG and streptavidin-HRP for 20 min and applied with iVIEW DAB Detection kit (Ventana). Leica autostainer XL (CV5030) machine was then used for counter staining with Mayer’s hematoxylin and mounting. The images were collected with Leica automatic upright microscope (DM 6000B).
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