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8 protocols using alexa fluor 488 goat anti mouse secondary antibody

1

Parkin Localization in Mitochondria

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After the addition of 100 μg/mL nMIL-100 (Fe) and 50 μM H2O2 for 6 h, ISK cells fixed in prechilled methanol/acetone (7:3) mixture for 10 min, washed twice for 5 min in PBS, and blocked with 3% BSA for 30 min. Then, the cells were incubated with the Parkin primary antibody (1:200 dilution) at 4 °C overnight followed by rinsing in PBS twice for 5 min on a shaker, the Alexa Fluor 488 goat anti-mouse secondary antibody (1:1000 dilution, Jackson ImmunoResearch, 115-545-003) was added for 1 h at 37 °C. Afterwards, Mito-Tracker Red and Hoechst 33342 dyes were applied successively for mitochondria and nuclear labeling. Fluorescence images of different channels were recorded by fluorescence microscopy and the mean fluorescence intensity value of Parkin and its co-localization with red mitochondria were measured by ImageJ 1.8.0 (USA) software.
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2

Quantifying Intracellular Collagen-I in Leukocytes

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Flow cytometry analysis was performed as described previously in Coffey et al.33 (link). Following white blood cell isolation using density gradient centrifugation, 1×106 cells were re-suspended in flow cytometry analysis buffer (Roswell Park Memorial Institute medium supplemented with 10% horse serum, 0.1% sodium azide, and 25 mmol/l HEPES). Cells were fixed and permeabilized using BD Cytofix/Cytoperm solution (BD Biosciences) and blocked prior to intracellular staining of collagen-I with mouse antihuman collagen-I antibody (Product code MAB3391; Millipore). These were then stained with Alexa-Fluor 488 goat antimouse secondary antibody (Product code 115-545-146; Jackson ImmunoResearch Europe). Cells were finally stained for cell surface antigen CD45 using PerCP antihuman CD45 (Biolegend), re-suspended in PBS, and analyzed on the flow cytometer (BD FACSVerse)44 (link)–46 (link). All analysis was done on a BD FACSVerse (BD Biosciences) using BD FACSuite v1.0.5 (BD Biosciences). CF levels were displayed as a percentage of the total white blood cell population (Fig. 2).
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3

Quantifying Circulating Fibrocyte Levels

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After white blood cell isolation using density gradient centrifugation, 1 × 106 cells were resuspended in flow cytometry buffer (RPMI medium supplemented with 10 per cent horse serum, 0·1 per cent sodium azide and 25 mmol/l HEPES). Cells were fixed and permeabilized using BD Cytofix/Cytoperm™ solution (BD Biosciences, Oxford, UK) and blocked before intracellular staining of collagen I with mouse antihuman collagen I antibody (product code MAB3391; Millipore, Cork, Ireland). These were then stained with Alexa Fluor® 488 goat antimouse secondary antibody (product code 115‐545‐146; Jackson ImmunoResearch Europe, Newmarket, UK). Cells were finally stained for cell surface antigen CD45 using PerCP® anti‐human CD45 (BioLegend, London, UK) and resuspended in PBS before subsequent analysis37, 38, 39. All analysis was done on a BD FACSVerse™ flow cytometer (BD Biosciences) using BD FACSuite™ v1.0.5 (BD Biosciences). Circulating fibrocyte levels were displayed as a percentage of the total white blood cell population (CFP).
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4

Quantifying DNA Damage Response via γ-H2AX

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Cells were plated at a density of 2000 in 24-well chamber slides and treated with different concentrations of cisplatin for 24 hours. The cells were fixed with MeOH and permeabilized with Triton X-100. Then cells were blocked with 1%BSA in PBS for 2 hours, and incubated with primary antibody against γ-H2AX (Biolegend, San Diego, CA, USA, 1:200 dilution) overnight. Finally, the cells were incubated with AlexaFluor-488 goat-anti-mouse secondary antibody (Jackson Immuno Research Laboratories, Inc., PA, USA, 1:200 dilution) and mounted with DAPI. γ-H2AX foci were assessed with green fluroscence. At least three independent experiments were conducted.
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5

Immunofluorescence Staining of Piezo1 and Cell Markers

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Cell samples were fixed in 4% paraformaldehyde in PBS for 15 min at room temperature. Tissue samples were fixed in 4% paraformaldehyde in PBS overnight at room temperature. The tissue samples were embedded, frozen, and sliced. Both the cell and tissue samples were then washed, permeabilized, and blocked. We used the following antibodies to investigate protein expression in these samples: anti-Piezo1 (Abcam, ab128245, 1:100), anti-Ki67 (CST, #9449, 1:400), anti-F-actin (Abcam, ab130935, 1:500), anti-α-SMA (CST, #48938, 1:200), Alexa Fluor 594 goat anti-rabbit secondary antibody (Jackson lab, 125369, 1:200), and Alexa Fluor 488 goat anti-mouse secondary antibody (Jackson lab, 133384, 1:200). Images were captured using a confocal microscope (Zeiss, Germany) or a Nikon Eclipse E800 microscope (Nikon, Melville, NY, USA).
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6

Immunofluorescence Detection of PrPSc Aggregates in Astrocytes

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For immunofluorescence-based detection of PrPSc aggregates in astrocytes, 1 × 105 cells of prion-infected (22L, RML, and ME7) astrocytes were seeded in 12-well culture plate. Once 60–70% confluent, the cells were fixed with 4% paraformaldehyde for 30 min at room temperature, followed by quenching of autofluorescence (with 50 mm NH4Cl, 20 mm glycine) for 10 min at room temperature. The cells were permeablized with PBS containing 5% FBS and 0.3% Triton X-100 for 30 min followed by denaturation of PrPC and epitope retrieval of PrPSc by incubation with 6 m guanidine HCl for 10 min at room temperature as described previously (44 (link), 45 (link)). The cells were incubated with anti-PrP mAb 4H11 (diluted at 1:100 in PBS containing 5% FBS and 0.3% Triton X-100) overnight at 4 °C. Alexa Fluor 488 goat anti-mouse secondary antibody (Jackson Immunoresearch) was used (at 1:200 in PBS containing 5% FBS and 0.3% Triton X-100) for 1 h at room temperature to visualize immunofluorescence. 4′,6′-Diamino-2-phenylindole (1:5000 in PBS) was used as a nuclear stain. Glial fibrillary acidic protein rabbit pAb was purchased from DAKO (Z0334). All images were captured under 63× oil lens at the same acquisition settings from a Zeiss LSM 700 confocal microscope.
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7

Immunofluorescence Analysis of Tissue Samples

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Cell samples were fixed with 4% PFA for 15 min at RT. Tissues were fixed with 4% PFA overnight at RT. Tissue samples were embedded in paraffin and sliced into 5 mm sections. Samples were incubated with following antibodies: Piezo1 (ab128245, 1:100, Abcam), α-SMA (ab7817, 1:100, Abcam), CCL24 (22306-1-AP, 1:200, Proteintech), CCR3 (ab32512, 1:100, Abcam), Wnt2 (A5864, 1:200, Abclonal, Wuhan, China), Wnt11 (ab31962, 1:200, Abcam), β-catenin(#8480, 1:100, CST), Alexa Fluor 594 goat anti-rabbit secondary antibody (Jackson lab, 125369, 1:200) and Alexa Fluor 488 goat anti-mouse secondary antibody (Jackson lab, 133384, 1:200). Images were visualized using a Nikon Eclipse E800 microscope (Nikon, Melville, NY, USA).
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8

Histological and Immunostaining Analysis

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Samples were fixed with 4% paraformaldehyde overnight, then embedded in paraffin. 5 mm sections were processed and stained with hematoxylin and eosin (H&E) and Masson’s Trichrome Stain Kit following protocol (Solarbio, Beijing, China).
For immunohistochemistry and immunofluorescence, 5 mm sections were incubated with primary antibodies against Piezo1 (ab128245, 1:1000, Abcam), α-SMA (ab7817, 1:200, Abcam), Collagen I (ab6308, 1:200, Abcam), GFP (ab290, 1:500, Abcam), Arg1 (16001-1-AP, 1:400, Proteintech), OAT (A6235, 1:100, ABclonal Technology), PYCR1 (13108-1-AP, 1:200, Proteintech), PRODH (22980-1-AP, 1:400, Proteintech) overnight at 4 °C. Sections were then incubated with Alexa Fluor 594 goat anti-rabbit secondary antibody (125369, 1:200, Jackson lab), and Alexa Fluor 488 goat anti-mouse secondary antibody (133384, 1:200, Jackson lab) for immunofluorescence or an HRP-conjugated goat anti-rabbit secondary antibody (138729, 1:500, Jackson lab) for immunohistochemistry. Images were captured using a Nikon Eclipse E800 microscope (Nikon, Melville, NY, USA).
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