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5 protocols using mg132 a2585

1

Quantifying Protein Interactions via Immunoblotting

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The following antibodies were used: anti‐caspase3 (D3R6Y, mAb #14220, Cell Signaling Technology, WB: 1:1000), anti‐Smurf2 (D8B8, mAb #12024, Cell Signaling Technology, WB: 1:1000, IF: 1:50), anti‐PARP1 (46D11, mAb #9532, Cell Signaling Technology, WB: 1:1000, IF: 1:200), anti‐MY (9B11, mAb #2276, Cell Signaling Technology, WB: 1:1000), anti‐Flag(9A3, mAb #8146, Cell Signaling Technology, WB: 1:1000, IF: 1:50), anti‐HA (6E2, mAb #2367, Cell Signaling Technology, WB: 1:1000) and anti‐β‐tubulin (10094‐1‐AP, Proteintech, WB: 1:1000). Protein A/G magnetic beads were acquired from Biotool. Cycloheximide (A8244) and MG132 (A2585) were purchased from ApexBio. Heclin (5433) was purchased from Tocris a bio‐techne brand.
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2

Analyzing STOP1 Protein Levels in Arabidopsis Roots

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Twelve-old-day seedlings of Col-0 WT, rae2, and rae3 harboring pSTOP1:STOP1-HA transgene were pretreated with a 0.5mM CaCl2 solution at pH 4.8 for 6 h and then treated with the same solution containing 0 or 30 μM Al at pH 4.8 for 12 h. Total proteins were extracted from the roots or shoots of each line using a extraction buffer composed of 20 mM Tris–HCl (pH 7.4), 300 mM NaCl, 5 mM MgCl2 (pH 8.0), 5 mM DTT, 0.5% NP-40, 50 μM MG132 (A2585; APExBIO, United States), and 1× Complete Protease inhibitor tablets EDTA-free (5892791001; Roche). Immunoblot analysis was performed to compare STOP1-HA protein level using anti-HA antibody (H3663; Sigma-Aldrich).
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3

Protein Expression and Analysis

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Polyclonal goat anti-Septin4 (abcam, USA), polyclonal rabbit anti-HIF-1α (abcam), polyclonal rabbit anti-VHL (proteintech, USA), polyclonal rabbit anti-caspase-3 (Cell Signaling Technology, USA), monoclonal mouse anti-HA (Cell Signaling Technology), monoclonal mouse anti-Flag (abcam), monoclonal rabbit anti-β-tubulin (Proteintech), and monoclonal mouse anti-GAPDH (abcam). CHX (A8244) and MG132 (A2585), used in DMSO, were purchased from ApexBio (USA). HIF-PHDs inhibitor BAY85-3934 was also purchased from ApexBio.
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4

Antibody Characterization and Reagent Validation

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Anti-HDAC1 antibody was previously generated in our laboratory69 (link). Anti-FLAG M2 (F1804) and anti-β-actin (A1978) antibodies were purchased from Sigma-Aldrich (St. Louis, MO). Anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH, HRP-60004) antibody was from Proteintech (Rosemont, IL). Anti-Lamin A (sc-20680) and anti-HA tag (sc-805) antibodies were purchased from Santa Cruz Biotechnology (Dallas, TX). Anti-EGFR (A300-388A) antibody was from Bethyl Laboratories (Montgomery, TX). Anti-phospho-EGFR (Y1173) (AF1095) antibody was from R&D Systems (Minneapolis, MN). Anti-Bim (2876) and anti-Myc tag (9B11, 2276) antibodies were from Cell Signaling Technology (Danvers, MA). Phosphotyrosine antibody cocktail (13-6620) was from Invitrogen (Thermo Fisher Scientific, Waltham, MA). Mouse (NA931) and Rabbit (NA934) IgG HRP-linked antibodies were purchased from GE Healthcare (Chicago, IL).
Rhodamine Phalloidin (PHDR1) was from Cytoskeleton (Denver, CO). Epidermal Growth Factor (EGF; cat. 236-EG) was purchased from R&D Systems. Gefitinib (ZD1839) was from Cayman Chemical Company (Ann Arbor, MI). AG-1478 (A8357) and MG-132 (A2585) were from ApexBio (Houston, TX). Cycloheximide (C1988) and leptomycin B (L2913) were purchased from Sigma-Aldrich.
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5

Dissecting Cellular Signaling Pathways

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Polyclonal goat anti-Septin4 (abcam, USA), polyclonal rabbit anti-HIF-1α (abcam), polyclonal rabbit anti-VHL (proteintech, USA), polyclonal rabbit anti-caspase-3 (Cell Signaling Technology, USA), monoclonal mouse anti-HA (Cell Signaling Technology), monoclonal mouse anti-Flag (abcam), and monoclonal mouse anti-GAPDH (abcam). CHX (A8244) and MG132 (A2585), used in DMSO, were purchased from ApexBio (USA). HIF-PHDs inhibitor BAY85-3934 was also purchased from ApexBio.
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