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2 protocols using histone 2b

1

Subcellular Fractionation and Immunoblotting

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MES23.5 cells were treated with P7C3 for 2 h. After washing, the cells were treated with MPP+ for 24 h. The cells were then collected, and cytosolic and mitochondrial fractions were isolated using the Mitochondria Isolation Kit for cultured cells (Beyotime). For immunoblot analysis, TOM20 (Santa Cruz Biotechnology, Santa Cruz, CA, USA) and α-Tubulin (Abcam, Cambridge, UK) were selected as the markers for mitochondria and cytosol, respectively. For obtaining the nuclear and cytoplasmic fractions, cells were treated as described above and then lysed in the fractionation buffer containing 3 mM CaCl2, 2 mM MgAc, 320 mM sucrose, 0.1 mM EDTA, 1 mM DTT, 0.5 mM phenylmethylsulfonyl fluoride (PMSF), and 0.5% NP-40 for 20 min on ice. After centrifugation for 15 min at 600 × g at 4 °C, the supernatant was collected as the cytoplasmic fraction. The pellets were washed twice with the fractionation buffer without NP-40 and lysed in the nuclear lysis buffer containing 280 mM KCl, 0.2 mM EDTA, 1 mM DTT, 0.5 mM PMSF, 20 mM Hepes (pH 7.9), 25% glycerol, 1.5 mM MgCl2, and 0.3% NP-40 as the nuclear fraction. Histone 2B (Abcam) and anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Millipore, Billerica, MA, USA) were selected, respectively, as the markers for nucleus and cytoplasm in immunoblot analyses.
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2

Immunoblotting Assay for Protein Detection

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The following primary antibodies were used: Mouse monoclonal antibodies against FLAG (Sigma-Aldrich; Merck KGaA; cat. no. F9291; 1:1,000), GAPDH (Chemicon; Merck KGaA; cat. no. SAB2108668; 1:5,000), GFP (Santa Cruz Biotechnology, Inc.; cat. no. (B-2):SC-9996; 1:1,000), HA (Santa Cruz Biotechnology, Inc.; cat. no. sc-7392; 1:500), BMAL1 (Santa Cruz Biotechnology, Inc.; cat. no. SC-365645; 1:500), Ub (Santa Cruz Biotechnology, Inc.; cat. no. sc-8017; 1:500); rabbit polyclonal antibodies against HRD1 (Abgent; cat. no. ap2184a; 1:500) and Histone 2B (Abcam; cat. no. ab52599; 1:500).
The following secondary antibodies were used: Horseradish peroxidase-conjugated sheep anti-mouse antibody (GE Healthcare; cat. no. NA931; 1:5,000) and anti-rabbit antibody (GE Healthcare; cat. no. NA934; 1:5,000) for 2 h at room temperature. The proteins were visualized with an ECL detection kit (Thermo Fisher Scientific, Inc.).
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