The largest database of trusted experimental protocols

P9135

Manufactured by Merck Group
Sourced in United States

P9135 is a laboratory product manufactured by Merck Group. It serves as a general-purpose instrument for applications in scientific research and analysis. The core function of P9135 is to facilitate various laboratory procedures and experiments, without further specification of its intended use.

Automatically generated - may contain errors

12 protocols using p9135

1

Pectolytic Activity Assay at Varied Temperatures

Check if the same lab product or an alternative is used in the 5 most similar protocols
To test pectolytic activity at different temperatures, isolated bacteria were cultured in LB media for 16 h at 28°C, and bacterial suspension was obtained by diluting with LB to an optical density of 0.5 at 600 nm, measured using a spectrophotometer (DS-11, DeNovix, Wilmington, DE, USA). As the semi-selective medium, we used a single layer-crystal violet pectate (SL-CVP) medium made using pectin from citrus peel (P9135, Sigma-Aldrich, St. Louis, MO, USA) according to Hélias et al. (2012) (link). Five microliters of each bacterial suspension were inoculated on potato tuber slices and SL-CVP media. The inoculated SL-CVP media were incubated at 28°C for 16 h. The dilution solution was used as the negative control.
+ Open protocol
+ Expand
2

FTIR Analysis of Pectin Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fourier Transform Infrared (FTIR) Spectroscopy was used to verify the chemical nature of the extracted material.
Each sample was incorporated with KBr (weight ratio KBr:pectin 10:1) and pressed into pellets. The FTIR spectra were collected at the absorbance mode in the region of 500–4000 cm−1 with an FTIR Vertex 70v Bruker instrument (Billerica, MA, USA). Every measure is the averaged result of 128 consecutive acquisitions.
Commercial pectin (Sigma-Aldrich P9135, St. Loius, MO, USA) was analyzed for comparison.
+ Open protocol
+ Expand
3

ELISA Binding Assay for Recombinant CpGLP1

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ELISA binding assay was performed according to Decreux and Messiaen (2005 (link)) with modifications. Nunc Maxisorp flat-bottom plate wells (Invitrogen, CA, USA) were coated with commercial pectin from citrus peel (P9135; Sigma-Aldrich, USA; https://www.sigmaaldrich.com) or pectin extracted from C. plantagineum leaves (250 µg ml−1, 100 µl well–1) at 4 °C overnight and then wells were incubated with the following solutions for the indicated time: 100 µl of 3% (w/v) low fat dried milk in wash buffer (20 mM Tris–HCl, 150 mM NaCl, pH 8.0) for 2 h; 50 µl of purified His-tagged CpGLP1 protein in binding buffer (1% low fat dried milk, 20 mM Tris–HCl, 150 mM NaCl, 2 mM CaCl2, pH 8.0) for 2 h; wash buffer (four times, briefly); 50 µl of anti-His tag antibody (1:10,000) (Jung et al. 2019 (link)) in incubation buffer (1% low fat dried milk, 20 mM Tris–HCl, 150 mM NaCl, pH 8.0) for 1 h; wash buffer (four times, briefly); 50 µl of goat anti-rabbit IgG peroxidase antibody (1:10,000) (Sigma, A9169) in incubation buffer for 1 h; wash buffer (six times, briefly). The bound recombinant CpGLP1 protein was visualized in the presence of the TMB (3,3′,5,5′-tetramethylbenzidine) substrate (Sigma, T2885). The absorbance was measured at 450 nm after color development in the dark and the reaction was stopped by adding 50 µl of 10% (v/v) phosphoric acid.
+ Open protocol
+ Expand
4

Heat-Fragmented Citrus Pectin Production

Check if the same lab product or an alternative is used in the 5 most similar protocols
Heat-fragmented citrus pectin (HFCP) was obtained according to the method described by Jackson et al [7 (link)]. A solution of 0.1% of citrus pectin (Sigma P9135, which is mainly composed of homopolygalacturonic acid) in double distilled water was heated for 60 min at 123°C and under a pressure of 17.2–21.7 psi. The solution was then frozen at −80°C and lyophilized. The dry material was stored at 4°C. Fresh solutions in culture medium were prepared just before being added to the cells for the incubations.
+ Open protocol
+ Expand
5

Pectin Morphology Analysis by SEM

Check if the same lab product or an alternative is used in the 5 most similar protocols
The morphology of extracted pectin was investigated through scanning electron microscopy, Zeiss LEO EVO 40 (Oberkochen, Germany). Different magnification images (5000×, 2500×, 500× and 66×) were recorded. Commercial pectin (Sigma-Aldrich P9135) was analyzed for comparison.
+ Open protocol
+ Expand
6

Screening Bacterial Pectinase Production

Check if the same lab product or an alternative is used in the 5 most similar protocols
A previously published method was adapted [41 ] as described earlier [27 (link)]. R2A media amended with 0.2 % (w/v) of citrus pectin (P9135, Sigma) and 0.1 % triton X-100 was autoclaved and poured in 150 mm Petri plates. Following bacterial inoculation with the 96 well pin replicator, the plate was incubated at 28 °C for 3 days. The plate was then flooded with Gram’s iodine. Pectinase activity was scored as development of clear halos around colonies.
+ Open protocol
+ Expand
7

Spectrophotometric Assay for Pectin Lyase Activity

Check if the same lab product or an alternative is used in the 5 most similar protocols
PL activity was measured spectrophotometrically by following the procedure described by Collmer et al. (1988) . An enzyme sample (0.5 ml) was mixed with 2.5 m1 of substrate solution of 60 mM Tris-HCl, pH 8.5, 0.6 mM CaCl2 and 0.24% (w/v) polygalacturonic acid (P-3889, Sigma-Aldrich Co., St Louis, MO, USA) in a 3-m1 cuvette with a 1-cm light path. The subsequent increase of absorbance at 232 nm was monitored over time with a spectrophotometer (Shimadzu Inc., Kyoto, Japan). One unit of enzyme activity was defined as one μmole of 4,5-unsaturated products released by the enzyme in one min at 30°C. The enzyme activity was calculated based on the molar extinction coefficient of 4,600 M−1 cm−1 for the unsaturated products at 232 nm (Collmer et al. 1988 ). Activity of PNL was measured using the same procedure as that used for assaying PL activity, except that polygalacturonic acid was replaced with orange pectin (P-9135, Sigma-Aldrich Co., St Louis, MO, USA). One unit of enzyme activity was defined as the formation of one μmole of 4,5-unsaturated products in 1 min at 30°C.
+ Open protocol
+ Expand
8

Pectin Methylesterase Assay in Apple Tissues

Check if the same lab product or an alternative is used in the 5 most similar protocols
The crude protein was extracted from apple skin and flesh tissues using 100 mM Tris-HCl buffer (pH 7.5) and used for the PME enzyme activity analyses according to the methods described by Liu et al. (2013) with some modifications. Briefly, 100 mg ground frozen samples were suspended in 100 mM Tris-HCl. The supernatants were collected for enzyme assay after centrifugation at 12,000 g for 15 min. The reaction mixture (180 µl) contained 156 µl of 0.4 mM NAD, 20 µl of 0.5% (w/v) pectin (from citrus peel, P9135, Sigma), 2 µl of 0.35 U formaldehyde dehydrogenase (from Pseudomonas putida, F1879, Sigma), and 2 µl of 0.1 U alcohol oxidase (from P. pastoris, A2404, Sigma). The reaction was initiated by the addition of 10 µl crude protein and the conversion of the NAD+ to NADH was recorded at OD 340 nm over 15 min using a microplate reader (Synergy H1 hybrid reader, BioTek, Oakville, ON, Canada). The change in absorption per unit time over the linear part of the reaction was calculated for each well and used to calculate the increase in the concentration of NADH. The NADH concentration was calculated using extinction coefficient Ɛ340 for NADH (6,220 M-1cm-1). One-unit (U) PME activity is defined as one µmol NADH formed per min.
+ Open protocol
+ Expand
9

Determination of Pectin Esterification Degree

Check if the same lab product or an alternative is used in the 5 most similar protocols
The degree of esterification (DE) of extracted pectin was calculated by means of the titration method [17 ] with slight modifications, as described by Hosseini et al. [18 (link)]. Dried pectin (0.1 g) was wetted with 2 mL ethanol. Distilled water at 40 °C (20 mL) was added and kept under stirring. After complete dissolution of the sample, 5 drops of phenolphthalein were added, and the solution was titrated with 0.1 M NaOH (V1). Then, 10 mL of 0.5 M NaOH was added. The sample was left to stand for 20 min for hydrolysis. Following, 10 mL of 0.5 HCl was added under stirring till the pink color disappeared. At the end, 5 drops of phenolphthalein were added, and the titration occurred through the addition of 0.1 M NaOH until a slight pink color persisted (V2). DE of the pectin was calculated according the following equation (Equation (1)): % DE=V2V1+V2×100
Commercial pectin (Sigma-Aldrich P9135) was analyzed for comparison.
+ Open protocol
+ Expand
10

Pectin-Based Edible Films from Citrus and Sunflower

Check if the same lab product or an alternative is used in the 5 most similar protocols
High-methoxyl pectin (HM) from citrus peel (P9135, Sigma-Aldrich, Mexico) with a galacturonic acid content ≥74% (dried basis) and methoxy groups ≥6.7% (dried basis), partly amidated low-methoxyl citrus pectin (LM) (GENU PECTIN type LM 104 AS, CP Kelco, Argentina) with esterification degree approximately 27%, recovered sunflower wax (SFW), previously obtained of waste material from sunflower oil refining process (winterization stage) and characterized [35 (link)] were used for films elaboration. Glycerol was employed as a plasticizer (G5516, Sigma-Aldrich, Mexico) and Tween 20 as surfactant (P1379, Sigma-Aldrich, Mexico). Calcium Chloride (CaCl2) and Sodium Bromide (NaBr) were obtained from J.T. Backer Inc. (Phillipsburg, NJ, USA) (98–99% purity, analytical grade reagent).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!